PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01076.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 165aa MW: 17479.7 Da PI: 7.5646 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00024 | 12 | 30 | 37 | 55 |
-STCHHHHHHHHHHHHHHH CS HLH 37 KlsKaeiLekAveYIksLq 55 +++Ka+i AveY+ksLq Zpz_sc01076.1.g00070.1.am.mk 12 RMDKASIIGDAVEYVKSLQ 30 799***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.68E-6 | 11 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-7 | 12 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MLLLTAAVVC VRMDKASIIG DAVEYVKSLQ SHARKLKEEV AALEARQWSS SPGPQDPRHD 60 RGVAVANDKR QDEDATGGAR VASVGATQVG EGRFLVTVEC ERRDGAAARL FAAVESLACF 120 RVESSSVGRS APDRLVSTAT LKVTIAGGGA AHSFRHALDA RLHDD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01076.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826116.1 | 3e-46 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2 | ||||
TrEMBL | A0A2S3I6T6 | 7e-45 | A0A2S3I6T6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CU72 | 8e-45 | A0A2T7CU72_9POAL; Uncharacterized protein | ||||
STRING | Sb06g012030.1 | 1e-42 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5546 | 30 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 2e-21 | FER-like regulator of iron uptake |