PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01076.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 319aa    MW: 34005.3 Da    PI: 8.5012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01076.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11140184655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                        Er+RR r+ +++ +Lr+l+P+      +K++Ka+i   AveY+ksLq
  Zpz_sc01076.1.g00050.1.sm.mkhc 140 VVSERKRRVRMTEKLYQLRSLVPNI-----TKMDKASIIGDAVEYVKSLQ 184
                                     568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.64E-13132184No hitNo description
SuperFamilySSF474599.16E-17134203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16136200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MERHLLQPQY LMPSSGFFNL NGGSVAHFPS CGGCGFAAAP AGLLHDCGWA GDPMQLGGEM  60
FGGGVNTVCA LVGNQGWQCV DGSSLRDPPQ ASISLDGDGD GRPPLAVAER QSVPELAAKP  120
RRDEGNVMGA RKRKDRAKTV VSERKRRVRM TEKLYQLRSL VPNITKMDKA SIIGDAVEYV  180
KSLQSHARKL KEEVAALEAR QWSSSPGPQD PRHDHGVAVA NDKRQDEDAT GGARLASVGA  240
TRVGEGRFLV TVECERRDGA AARLFAAVES LACFRVESSS VGRSAPDRLV STATLKVTIA  300
GGGAAHSFRH ALDARLHDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131146KRKDRAKTVVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01076.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826116.19e-96transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2
TrEMBLA0A2S3I6T63e-94A0A2S3I6T6_9POAL; Uncharacterized protein
STRINGPavir.Ga01979.1.p3e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-36FER-like regulator of iron uptake