PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01059.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 560aa    MW: 61870.9 Da    PI: 10.5197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01059.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16109157148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W++eEd +l+++++ +G+g +W + +++ g++R++k+c++rw++yl
  Zpz_sc01059.1.g00010.1.am.mk 109 KGPWSPEEDRKLKEYIHNHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 157
                                   79*********************************************97 PP

2Myb_DNA-binding37.94.2e-12164206246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g ++++Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Zpz_sc01059.1.g00010.1.am.mk 164 GDFSEDEDRIICSLFTAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 206
                                   689******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.135104157IPR017930Myb domain
SuperFamilySSF466893.63E-26106204IPR009057Homeodomain-like
SMARTSM007171.9E-12108159IPR001005SANT/Myb domain
PfamPF002491.6E-15109157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23110164IPR009057Homeodomain-like
CDDcd001672.97E-9111157No hitNo description
PROSITE profilePS5129421.723158212IPR017930Myb domain
SMARTSM007175.5E-11162210IPR001005SANT/Myb domain
PfamPF002493.7E-10164206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-22165212IPR009057Homeodomain-like
CDDcd001672.59E-7166208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGRSSRIASS ARALIVTALA NKRPPKCEGE ALSGCLIPLI SLREISARPV RVSHRHRGST  60
NGRSKRDRRA RRTELSIQLP GGRRRGVPTP SPIALMGRAP CCDKASVKKG PWSPEEDRKL  120
KEYIHNHGTG GNWIALPHKA GLKRCGKSCR LRWLNYLRPN IKHGDFSEDE DRIICSLFTA  180
IGSRWSIIAA QLPGRTDNDI KNYWNTKLKK KLMLAHGLQP PTTTNTNSHH HRSKKQQQLF  240
FSAQAEAPSS ATQPPGEPLS LQYLSTPFHN FSYHYGSRCY DSNTPTSHHS AGTGGSLLML  300
GGSNDEQHMI SSPCFPNYGS SHGHDSAAVA ASLAMESFVF QDDHHKALQV LLASGTASLD  360
HQNGTNTSCG YEETAKPLLV NVTAGGGGSN WVSNSFFCSY SEEKSSSSPN AAGQKRVAAI  420
SPLTAIVISR LFAARPPAHF RRRLKKEKNL YPASLIVFGS SSLILGTRFA RDGTLHRFIF  480
HMDLHLTRGF DRDKGKRHRS CSSQGWDTYT SNWELHANGL LDTWDSWSAC PGWQEQRKTF  540
SWSSTTPTIP GRCTARLNRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-251092127108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01059.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956269.12e-95myb-related protein Hv1
TrEMBLA0A2S3GXU51e-100A0A2S3GXU5_9POAL; Uncharacterized protein
STRINGSi030544m9e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-72myb domain protein 36