PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01056.1.g00030.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 547aa    MW: 62574.6 Da    PI: 7.1461
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01056.1.g00030.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.9e-161812443398
                                     -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                     +++l+ +d++  +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v+v+r
  Zpz_sc01056.1.g00030.1.am.mkhc 181 TQELITKDLHESEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL--RSETGEQRVGVRR 244
                                     458999******************************************999..4477778999997 PP
2Auxin_resp94.32e-31270351183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                     a+ha++t+s+F v+Y+Pr+s+s+++v+++k++++ k+ ++ GmRfkm+fe++d++ +++sGt+v+  dl p +W++S+W
  Zpz_sc01056.1.g00030.1.am.mkhc 270 ASHAIKTNSIFLVYYRPRSSQSQYIVSLNKYLQSSKIGFTDGMRFKMSFEGDDVPVKKFSGTIVDKGDLAP-QWKGSEW 347
                                     789********************************************************************.******* PP

                      Auxin_resp  80 rsLk 83 
                                     + Lk
  Zpz_sc01056.1.g00030.1.am.mkhc 348 KTLK 351
                                     *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.9E-4163246IPR003340B3 DNA binding domain
SuperFamilySSF1019368.5E-20170273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-20174259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-9178244No hitNo description
PfamPF023621.6E-13179244IPR003340B3 DNA binding domain
PROSITE profilePS508639.587183246IPR003340B3 DNA binding domain
PfamPF065074.0E-27270351IPR010525Auxin response factor
PROSITE profilePS5174515.187447530IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
PTHHRRVGDH TNTLHLLLIL LRHFASQEPG ASCRPKKPRP LPRRALAMAQ ARDLELFAEL  60
WRACAGPLVE LPQRDERVFY FLQGHLEQLQ EPTDPALLAE QIKMFQVPNK ILCKVVNVEL  120
KVNSWITLAL FNLLLQSRFL NYYTSTSILV SAAQAETETD EMFAQITLQP DPDDMSMPTP  180
TQELITKDLH ESEWRFKHIY RGQPRRHLLT TGWSTFVTSK KLIAGDAFVY LRSETGEQRV  240
GVRRLVQKKS TMPASVISSQ SMRLGVLASA SHAIKTNSIF LVYYRPRSSQ SQYIVSLNKY  300
LQSSKIGFTD GMRFKMSFEG DDVPVKKFSG TIVDKGDLAP QWKGSEWKTL KVQWDDAANF  360
SGPERVSCWE IEPFDASAPS INIPMQPSTK TKRSRETAES LDVQELEPAQ EFWLSGSGRA  420
QQQEKTALKQ ELLLGLAFLL TKLRNPLPSC LVQMHGNAVG RSVDLANFDR YEQLIGELEH  480
MFEIKELNSK EKWKVAFTDD DGATIEIEDN RPWLEFRQVV KKIVIYPIED WRKVEPAPEE  540
EDLKTEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1045638119362Auxin response factor 1
4ldw_A1e-1045638119362Auxin response factor 1
4ldw_B1e-1045638119362Auxin response factor 1
4ldx_A1e-1045638119362Auxin response factor 1
4ldx_B1e-1045638119362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01056.1.g00030.1.am.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587590.0HQ858759.1 Zea mays clone UT1501 ARF transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816439.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2T7DTH30.0A0A2T7DTH3_9POAL; Auxin response factor
STRINGPavir.Eb00045.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-118auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]