PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01045.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 701aa    MW: 75662.4 Da    PI: 8.4901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01045.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-16463506146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++
  Zpz_sc01045.1.g00230.1.am.mk 463 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 506
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.422394441IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11394460IPR009057Homeodomain-like
SuperFamilySSF466891.36E-19396504IPR009057Homeodomain-like
SMARTSM007171.5398459IPR001005SANT/Myb domain
PROSITE profilePS5129425.408458512IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-25461513IPR009057Homeodomain-like
SMARTSM007176.1E-16462510IPR001005SANT/Myb domain
PfamPF002492.8E-14463506IPR001005SANT/Myb domain
CDDcd001673.93E-11465505No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
LPPPPAGLLR ILSTEKPLSP GVGRAVSLSE RKSATARPNH PARTHARRRC REATPRHQTM  60
PFPWGLSSRD TAETASGGAQ VCARRRREWE ATGAASFLLG QGDDVRPVIV ATATATMRCD  120
ARILSLLIWQ QVSAACLDRS GSQVASCRRH KENIVRGIEG ADRRVNWDVN KGYSCKASAH  180
HAFRCDGNGT GTAPTSSQSS QSVPDSQGQR TNTRDELKAP PERGSDLGVN ASVDAGDGNE  240
PAGGADAATG STGVARQHAA YHTWSRSAPP EKEGARATMT GHLTLRRSIT GYRREASRVR  300
ACCFRSISNQ PPPRSIDSFA VVAGVAKSLR RSIGQGFVHE RLPRAPLDTN GRPPVDRPTR  360
EREEEKRETS TLRLMRGQLL DPRMGRLSGG VGVQPKLRKG LWSPEEDEKL YNHIIRRGVG  420
CWSSVPKLAG KHTHAHSPAG TLFYRSLPRT LRWINYLRPD LKRGSFSQQE EDLIVALHEI  480
LGNRWSQIAS HLPGRTDNEI KNFWNSCVKK KLQQRGIDPS THKPIAGGAG AAEAAAAALP  540
DQDQDHKPAA EGAAAPKQQV ALDPFPVMTD FGGCGFDQLG VANVAALYGQ FDYDVGKASD  600
AAAGFVADYS SVLDVSENLG YGESSSNSSN WNCAEIGSVL DSEVLDWASG AGVKAEPFTE  660
MERQHGGGGE VDDDALEHTF ALPAGCQEQS LAHFDFNLEC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-213955123108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01045.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635973e-91BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds.
GenBankKJ7274943e-91KJ727494.1 Zea mays clone pUT5353 MYB transcription factor (MYB99) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-55myb domain protein 86