PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01028.1.g00100.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 254aa MW: 27691.7 Da PI: 5.469

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01028.1.g00100.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.4	3.8e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl ++v + Zpz_sc01028.1.g00100.1.sm.mkhc 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLSEVVSK 86 579************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.46E-20	3	94	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.6E-26	3	72	IPR009072	Histone-fold
Pfam	PF00808	5.9E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60 TLNSFHLKQC VKRYSSFDFL SEVVSKVPDL GGADSCGDER GLPRRRKSNG SDQENDESRS 120 SKMVIRSSLS PRGRGRGRGR GRGRPPTKRK EVGYVQFEED SSMYAEQGEA LPGEDTVAKT 180 NHGNESVPQS INPAVDAASA APAPATSSKV EETNTDHQAD WPMPDAIGNI GVGPSGFGHL 240 TVQVDEDEDY DNED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	106	PRRRK
2	133	142	RGRGRGRGRG
3	133	143	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01028.1.g00100.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449647.1	1e-145	dr1-associated corepressor
TrEMBL	C5Y3V7	1e-144	C5Y3V7_SORBI; Uncharacterized protein
STRING	Sb05g020860.1	1e-144	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-52	nuclear factor Y, subunit C11