PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01011.1.g00160.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 497aa    MW: 51693.7 Da    PI: 7.5716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01011.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.2e-30241300159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+
  Zpz_sc01011.1.g00160.1.sm.mkhc 241 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCAEDKTILITTYEGTHNHQ 300
                                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31228302IPR003657WRKY domain
SuperFamilySSF1182904.97E-27234302IPR003657WRKY domain
PROSITE profilePS5081127.864236302IPR003657WRKY domain
SMARTSM007744.3E-35241301IPR003657WRKY domain
PfamPF031064.7E-26242300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEVAVERLPV KEEKRADDRP EIVAIGSALP IVFESFQSPQ RAASIKLQED SNRLEAARAE  60
MGEVKEENER LKTLLSRIVS DYQSLRMHYL DVVKVREQSG KAKLPAEPAP VADVDDLVSL  120
SLGTRSNGGA RPKGHERSSS SSGTADDSQL SLGLGFGHGN GPSTDDDKAS GASAGPVLNL  180
SSGSSSAEDT AKISEADASR PGETRKSPSA GAGDGSADDE VQQQAKRIRV SVRVKCDTPT  240
MNDGCQWRKY GQKISKGNPC PRAYYRCTVA PNCPVRKQVQ RCAEDKTILI TTYEGTHNHQ  300
LPPAATAMAS TTSAAAAMLT TGSTSSTPAA SLARHHLPFA THAGLLGPTT MVSTAASCPT  360
ITLDLTAPAT PAHALMESSP YAAGAYESKA LPAAWSSGLP AYGGNLPSYY AAKSSPAMGN  420
LFGGLGLPSR SDHLFGQSSF LQRSTSLGGG QSAVAPVVTD TLAKAITSDP SFQSALAAMI  480
TSYMGRGAGS GGESAHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22229304276WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01011.1.g00160.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457211.10.0probable WRKY transcription factor 72
TrEMBLA0A3L6SPC50.0A0A3L6SPC5_PANMI; Putative WRKY transcription factor 72
STRINGSb03g003370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-67WRKY DNA-binding protein 72