PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01010.1.g00110.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 690aa MW: 75977.4 Da PI: 8.6621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.1e-17 | 392 | 439 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zpz_sc01010.1.g00110.1.am.mk 392 KGPWTPEEDIILVSYVQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 439 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.1 | 1e-13 | 445 | 490 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++v++ +lG++ W++Ia+++ Rt++++k++w+++l Zpz_sc01010.1.g00110.1.am.mk 445 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLS-QRTDNDIKNYWNTHL 490 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01554 | 9.3E-28 | 134 | 294 | IPR002528 | Multi antimicrobial extrusion protein |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 383 | 442 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.672 | 387 | 443 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.04E-29 | 389 | 486 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 391 | 441 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-16 | 392 | 439 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.02E-11 | 394 | 439 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 443 | 495 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.77 | 444 | 494 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-12 | 444 | 492 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-11 | 445 | 490 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-7 | 447 | 488 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006855 | Biological Process | drug transmembrane transport | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0015238 | Molecular Function | drug transmembrane transporter activity | ||||
GO:0015297 | Molecular Function | antiporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MLNGPAAVAD ATDNKQPPSI IVIQSAAAEK SMIGWLLSSS WQMRFFLPDG GGLSCTLDWR 60 KRNQRRARPR GHGMQTTSYL FLFNVTFSSP SSQHMYVVNP HFSPLNILCH HRSPAASGRR 120 AWEENKTLWV VAGPSIFTRF SSFGVTVISQ AFVGHIGATE LAAYALVSTV LMRFSNGILL 180 GMASALETLC GQSYGAKQYH MLGIYLKCSW IILFACSVIL LPVYIFTEPL LVALGQDPAI 240 FAVAGTISLW YIPVMFSYVW SFTLQMYLQA QSKNIIITYL AMLNLGLHLV LSWLMTVKFQ 300 LGLAGLAFVF FGGCPLTWTG FSYAALTDLS AIIKLSLSSG VMLWRQQGPE ISSILTTIDV 360 DNRQQLAQPS CGRPSPEKMG RPPCSDNVGI KKGPWTPEED IILVSYVQEH GPGNWRSVPI 420 NTGLMRCSKS CRLRWTNYLR PGIRRGNFTP HEEGIIVHLQ SLLGNRWAAI ASYLSQRTDN 480 DIKNYWNTHL KKKLKKHQAI GAIFAPPPSG LLSSSTAPAL TSTSHTDHPM MTSPLSKYNY 540 APRTECRNPG DDVTQLIARR SPFAAPAGSL DAESSSYSSY ASSMDNISKL LDSFMKSITP 600 QNDAAHIKPS SNPLLSFEQV SGGGALSNFA DVLPPQPVLM DERSHHEQPK QQQAQAPLSS 660 IEKWLLDEAA EQVGDLIDQF DGCCSVPMLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 387 | 494 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01010.1.g00110.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 1e-75 | myb domain protein 60 |