PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc01006.1.g00060.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 684aa MW: 72173.7 Da PI: 5.0774 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.3 | 1.2e-10 | 288 | 344 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Zpz_sc01006.1.g00060.1.sm.mk 288 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 344 57*******************5444.2455535555.7799999*************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-14 | 288 | 353 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-8 | 288 | 344 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-16 | 288 | 353 | No hit | No description |
PROSITE profile | PS51032 | 17.108 | 289 | 352 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-11 | 289 | 352 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-18 | 289 | 358 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 290 | 301 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-4 | 359 | 403 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.755 | 371 | 397 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-5 | 372 | 399 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-6 | 372 | 398 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 379 | 399 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.966 | 386 | 448 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0023 | 413 | 454 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-6 | 423 | 449 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 684 aa Download sequence Send to blast |
MASANNWLGF SLSGQENAQP NQDTSSAIDI SGGSDFYGLP AQQASDGHIG VDHASYGIME 60 AFNRGPQETQ GEETAARQPL YRLMICSAYD WNLRGMDYNG GASELSMLVG SSGGGGSGKR 120 AVEESEPKLE DFLGGNSFVS EQDQSGGYLF SGIPMASSTN SNSGSNTMEL SMIKTWLRNN 180 QVPQPQPPAP HQPQPEEMST DASANSFGCS DSQGRNGTVA TGSSQSLALS MSTGSHLPMV 240 VGGGTASGAA SESTSSENKR ANGAMDSPGG AVEAVPRKSI DTFGQRTSIY RGVTRHRWTG 300 RYEAHLWDNS CRREGQSRKG RQGGYDKEDK AARAYDLAAL KYWGTTTTTN FPYCIAQTPP 360 AWEMASKDRE STEEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESS TLPVGGAARR 420 LKDAEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSILES STLPVGGAAR RLKDAVDHPE 480 AGATIWRAGM DGGVISQLTD AGLGSYASYH HHGWPTIAFQ QPSPLSVHYP YGQPSRGWCK 540 PEQDAAVAAA AHSLQDLQQI HLGSTAHNFF QASSSSTVYN GGGATGYQGL GGSSFLMPSS 600 TVVADQGHSS TANQGSTCSY GDEEGRLIGY DAMVASAGGD PYAAARGGYQ FSTSQGSAAS 660 TVSIARANGY ANNWSSSFNA NGMG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc01006.1.g00060.1.sm.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU955732 | 0.0 | EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147535.1 | 0.0 | protein BABY BOOM 1 | ||||
TrEMBL | B6SSL7 | 0.0 | B6SSL7_MAIZE; Protein BABY BOOM 1 | ||||
STRING | GRMZM2G366434_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 5e-63 | AP2 family protein |