PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00991.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 277aa    MW: 30732.7 Da    PI: 7.6393
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00991.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.31.1e-33113203273
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 
                                   ++++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt++WLl q+kpai+ l +t                 
  Zpz_sc00991.1.g00040.1.am.mk 113 PVRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDRLGFDKASKTVNWLLIQSKPAIDSLCDTsmpgapvfgptvvkgkk 193
                                   6899************************************************************44444444444444444 PP

                           TCP  66 ..ssssasec 73 
                                     +sss+  c
  Zpz_sc00991.1.g00040.1.am.mk 194 geGSSSSPGC 203
                                   4333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-31115178IPR005333Transcription factor, TCP
PROSITE profilePS5136932.499115173IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLPHYPGNPP RRHHHHHQCV YQQEQPLIPN PTAAFLMPAT ASWDEYGGQI FPAADMYNQQ  60
ETLEAVLRQA VTAPRQQDHH PAVERELESS RDGAAPAVDD GVAPAAVVPR RRPVRTDRHS  120
KIRTAQGVRD RRMRLSVGVA RDFFALQDRL GFDKASKTVN WLLIQSKPAI DSLCDTSMPG  180
APVFGPTVVK GKKGEGSSSS PGCFKDTRER VRSRGALDPA AAFMEDRGGS VLDWNMSEAA  240
ATAPAAMELT QPMEGLEYYQ YYQLEEMMRC NNGVLPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00991.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634579e-68BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBankEU9756369e-68EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
GenBankEU9757689e-68EU975768.1 Zea mays clone 499966 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7268969e-68KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973503.22e-95transcription factor TB1
TrEMBLA0A1E5VGN22e-79A0A1E5VGN2_9POAL; Uncharacterized protein
STRINGSi015230m2e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.26e-21TCP family protein