PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00991.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 526aa    MW: 55976.7 Da    PI: 11.7675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00991.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10147175331
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                                   r+h+e+ErrRR+riN  +++Lr+llP+ +
  Zpz_sc00991.1.g00020.1.am.mk 147 RSHSEAERRRRQRINGHLAKLRSLLPNTT 175
                                   78************************963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.623144199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.89E-8147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-8147175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9147202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.84E-7147177No hitNo description
Gene3DG3DSA:3.30.1390.106.9E-20422497IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
SuperFamilySSF547363.4E-15437496IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
PfamPF026179.3E-12441496IPR003769Adaptor protein ClpS, core
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030163Biological Processprotein catabolic process
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MWEPGGLHGS HEALLLQSAG SGAGDVHGHA SGRMPWLGPA AAPSYSYIAP HAPPPPGLFG  60
GADAAGGPFG GFGVGGGYCG DGGGTAGAVG LFGLDHPSLH QQHHGTPGGG AAGSSRVVSG  120
LLGTLQAELN RMTSREIMDA KALAASRSHS EAERRRRQRI NGHLAKLRSL LPNTTKNELE  180
AWPYQACAIT GSIDLLRLLK ARWHAREGPS RSLRPRRKPR VLRHALSFGE IELAARARQE  240
RTLVSERITS ASRTRRSRRQ ATHQKAKQRL ARMDHGSRPR MQRLPDHSIA PSRPLLATAT  300
TLTSGRTGPV DSRSAGRVKR GGSPATRTKQ LGQKILFFRS QSAPHVYRRP TEPAPPRGQG  360
RGRGSEASSA PTAATALGDM EASQIAFSAS SVFMTRHAAA GPSALAAVAS GKGGGVLDRP  420
AEKVTPGRRS EFDVKKKRKM TSPYRVILHN DNYNRREYVV KVLMKVIPGM TVDNAVNIMQ  480
EAYVNGLSVV IVCSQSEPLV RYKASTAAVV GRRRPDLAAA MHGCAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217RPRRK
2213219RPRRKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00991.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2467556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-11bHLH family protein