PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00990.1.g00110.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARR-B
Protein Properties Length: 642aa    MW: 69706 Da    PI: 6.7447
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00990.1.g00110.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.2e-28209262155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Zpz_sc00990.1.g00110.1.sm.mk 209 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 262
                                   79*******************.********************************8 PP
2Response_reg77.83.8e-26281361109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   vl vdD+p+ ++ll+ +l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ 
  Zpz_sc00990.1.g00110.1.sm.mk  28 VLAVDDDPTCLKLLEGLLRRCQY-HVTTTGQAATALKLLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSV 106
                                   799********************.***************888889*******************87754.558******** PP

                                   TTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpeelvk 109
                                   +ge +++ + +  Ga d+l Kp+ +e+l++
  Zpz_sc00990.1.g00110.1.sm.mk 107 NGETQTVMKGITHGACDYLLKPVRIEQLRT 136
                                   ****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.7E-1852632IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-3425146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-4125161No hitNo description
SMARTSM004481.7E-3126138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.94727142IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2328137IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.21E-2629141No hitNo description
PROSITE profilePS5129411.34206265IPR017930Myb domain
SuperFamilySSF466896.09E-20206266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29207267IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24209262IPR006447Myb domain, plants
PfamPF002492.3E-6211261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MTVEEVKRPL GNANGHAGKD QFPVGMRVLA VDDDPTCLKL LEGLLRRCQY HVTTTGQAAT  60
ALKLLRENKD QFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSVNGET QTVMKGITHG  120
ACDYLLKPVR IEQLRTIWQH VVRRRSCDAK NHGNENDDAG KKAMNAEGEN GGANRNKRAS  180
RKCRDENGDD VDDSDENSNE NGDSSTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL  240
DLMNVENITR ENVASHLQKY RLYLKRLSAD ASRQPNLSVA LGGRNPTYIN MGLEAFKNYN  300
AYGRYHSIPN TNHSQPNNLL ARMNSPSAFG THGFLPSQQL QIGYTQNNLS TSVGNVGGMS  360
NGNLITGANM SLQDSSKCFP TGPSGNSFSN ISNATTLAPA NSMPSQSLEP SKQQHLGRMH  420
SSSGSADPFN SFVGESPLFP DLGRCNTNWP TAVSSSIQEL GQQDSVSRAT LRVNAPKIEP  480
LASEIPLLGN EIQSQVASLT SNALSMSFNQ DAVPFTYGSS TNTIKMLSTN IAVSNSGINT  540
SSPNFQIDNS VVPRQTMDIG NAGGVPTMQV GRIDQQAVSN QLNCNNELMG ASGLQRGLSG  600
DLDDIVDMFR PASDPRSQLS CCLEGDVNHG TIDSSIQRVF RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25205268164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00990.1.g00110.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLK3YQT60.0K3YQT6_SETIT; Two-component response regulator
STRINGSi016630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]