PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00982.1.g00240.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 757aa    MW: 80049.8 Da    PI: 8.2371
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00982.1.g00240.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.8e-12341397155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zpz_sc00982.1.g00240.1.am.mk 341 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 397
                                   78*******************433.44555535555.77******************98 PP
2AP2232e-07440472136
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                                   s y+GV+++++ grW A+I  +s    +k  +lg+f
  Zpz_sc00982.1.g00240.1.am.mk 440 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTF 472
                                   57****************999754...4*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-13341406IPR016177DNA-binding domain
CDDcd000183.80E-16341404No hitNo description
PfamPF008471.2E-9341397IPR001471AP2/ERF domain
SMARTSM003807.2E-21342411IPR001471AP2/ERF domain
PROSITE profilePS5103216.937342405IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-11342405IPR001471AP2/ERF domain
CDDcd000181.12E-12440568No hitNo description
SuperFamilySSF541712.68E-5440473IPR016177DNA-binding domain
PROSITE profilePS5103212.984441566IPR001471AP2/ERF domain
SMARTSM003805.5E-14441572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-4441474IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-6540566IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MRKTDCETTL LVDSAHAYLP PEVGSARHHL VLLRLACRRH YKMTSNSSQN VSSCSTGGGD  60
AAAGGGSWLG FSLSPHHVAS MDAAADGARG VPQHHLGLFY PPVTSSPAPF CYALGGSGQD  120
SVVGQAAGAS GGGFYPALSS MPLRSDGSLC ITDAYRRSEE GQHHGMVASS ASPKLEDFLG  180
AGPAMALSLD NSSLYYGGGH GGHPEHGQDH GGYPQPVHCA MIPGAAATHD VYGHALMVDE  240
QSAAAIAASW FAARGVGGYD VNSTGVDAGL VPCHPLALSM SSGTGSQASC VTMQMGAHAD  300
PVAEYIAMEG SKKRGTDRGA GAGQKQTVHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW  360
DNSCRKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGPST HINFSLEDYR EELEEMKNMT  420
RQEYVAHLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VSGNKDLYLG TFTLAPPRRM  480
FAPPIPAHFS PRFCACVAGC RPQLALAFGH LFVRLARRGP ARLGAPDRAS LSRFACLRIA  540
TQEEAAEAYD VAAIKFRGLN AVTNFDITRY DVEKIMESST LLPSELVRRR KDGDVGTVAA  600
AAAITEGDAT AVANAAAALV HAGNGSNAVE WKIQAAAALP AAPGRTDEHV QQNHGILASE  660
AFSAFSGLDD MVPGVEADNA HMSNASSLAT SVSNSREQSP ERGGGLAVLF AKPVAAASKL  720
TCPPLPLGSW VSPSPVSARP AVSIAHLPMF AAWTDAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00982.1.g00240.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-138AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ389141e-108ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A1D6L6650.0A0A1D6L665_MAIZE; AP2-like ethylene-responsive transcription factor ANT
STRINGSb01g006830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-106AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]