PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00977.1.g00080.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Nin-like
Protein Properties Length: 390aa    MW: 42186.9 Da    PI: 4.4037
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00977.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK58.71.1e-18301351252
                        RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                   +++++  d++ yF+lp+++A+k+L+vc TvLK   R++G+kRWP+R i+++
  Zpz_sc00977.1.g00080.1.sm.mk 301 TSKLERRDIACYFHLPMEEACKKLQVCGTVLKGVSRKFGLKRWPYRMINKI 351
                                   678999******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.027291372IPR003035RWP-RK domain
PfamPF020422.0E-17304351IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAANGDNNDH GAEGQWLFDP LLVPDDLDDV MHLLNVPADD DQYLPPPPAS TQNVAADGSY  60
SGNPLDGTAM AGNVGAYSSV DSTAHPAAVT AMAGGSSTSA HQDVGASSSY VHQGVLDCTG  120
CQMLREIMHI KGLETTKLCI HGAPGLFYHA TLEVYHANNE GLALEPTHQS FVDFIARDYT  180
WVKHYLIEYA QKRAAGGYTV VHDSTSDFLD VLCTSMAGVC VHADDNGDVA APAEAENGVA  240
VDEQIVPADS GDAVQPMIAQ EEILPDEPGP SELRNDAVDD QEEQVVQPHA RSTLAIQRER  300
TSKLERRDIA CYFHLPMEEA CKKLQVCGTV LKGVSRKFGL KRWPYRMINK IDNKIAKLRE  360
NGDGSAESMA EIQKLTDSRR EIIDGPSEEI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00977.1.g00080.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321666.12e-84uncharacterized protein LOC8084238
TrEMBLA0A368QD387e-98A0A368QD38_SETIT; Uncharacterized protein
STRINGSi025242m2e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.14e-10RWP-RK domain-containing protein