PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00972.1.g00100.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 285aa MW: 31041.3 Da PI: 11.4201

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00972.1.g00100.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.1	8.4e-22	239	285	2	48
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 C v++C+adls++++yhrrhkvCe+hsk+pvv+v g+e+rfCqqCsr Zpz_sc00972.1.g00100.1.am.mk 239 CSVDRCRADLSRCRDYHRRHKVCEAHSKTPVVVVGGQEKRFCQQCSR 285 **********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-22	233	285	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.666	236	285	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.15E-20	238	285	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.8E-15	239	285	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MLATFGHLVV HHRMSRNRGD AVFQGELLHG LDRNNHGNAT GASSGGAWSG KLHWEPPSLM 60 LRLPPATQRF AADTKPHHPS VSRHTHPRAY AVRSLLTAPP LSTVPPGRLP PIPAMSSSCC 120 ARECKGSIKI TDHGFPRDIA ARFLARMPFS SWLQWWRRFL AGDMNRAAVT SEVSSWGAAA 180 DRGPIMLSFA GPSSSTSPAA EIQFQDFSVG LVRRAQPPGS SGARRRSRGA SGGGVPEACS 240 VDRCRADLSR CRDYHRRHKV CEAHSKTPVV VVGGQEKRFC QQCSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	2e-17	239	285	6	52	squamosa promoter-binding protein-like 12

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00972.1.g00100.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC133608	3e-52	AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBank	AC135569	3e-52	AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBank	AP014967	3e-52	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12961	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-18	SBP family protein