PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00969.1.g00050.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 362aa MW: 39059.6 Da PI: 10.226

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00969.1.g00050.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ L H+++H Zpz_sc00969.1.g00050.1.am.mk 75 YTCGYCKREFRSAQALGGHMNVH 97 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.12E-5	74	102	No hit	No description
Pfam	PF13912	2.8E-6	75	98	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.094	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSLSLPRNGE RCSDGILADK VDYSHNTLPA MERDHGRGLK HQHQQQQVAW TPGHNFGLSG 60 CFSWPAVPQP LSSSYTCGYC KREFRSAQAL GGHMNVHRRD RARLRQCCPA YAPSPNLIAA 120 HHRRAAAVGP PLPNLNFVPP HCAGATTAEP AVYSFFSTTT TSAMKAAVQV NLELGISGGV 180 CGHDGAVPEE GGLDLELRLG CPLDGGNKNH DVRTFPCSRW QRGPCKKKLR LSGARSLPHA 240 AAQGRRRPAS GRSEKIRLLG LGAHVAHHCR LLDRLIYEVP RHHRNLAISE LCHVIGVPSS 300 RQMKFSFNRH PPCPRPSLVP VRTPPYPTSA TSAAVILAPT NGGAGGRGAT GPLPPPLSIE 360 IF

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSLSLPRNGE RCSDGILADK VDYSHNTLPA MERDHGRGLK HQHQQQQVAW TPGHNFGLSG  60
CFSWPAVPQP LSSSYTCGYC KREFRSAQAL GGHMNVHRRD RARLRQCCPA YAPSPNLIAA  120
HHRRAAAVGP PLPNLNFVPP HCAGATTAEP AVYSFFSTTT TSAMKAAVQV NLELGISGGV  180
CGHDGAVPEE GGLDLELRLG CPLDGGNKNH DVRTFPCSRW QRGPCKKKLR LSGARSLPHA  240
AAQGRRRPAS GRSEKIRLLG LGAHVAHHCR LLDRLIYEVP RHHRNLAISE LCHVIGVPSS  300
RQMKFSFNRH PPCPRPSLVP VRTPPYPTSA TSAAVILAPT NGGAGGRGAT GPLPPPLSIE  360
IF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00969.1.g00050.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU959193	8e-38	EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	9e-16	C2H2 family protein