PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00963.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 327aa    MW: 36064.5 Da    PI: 8.5823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00963.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  Zpz_sc00963.1.g00010.1.sm.mk 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                                  79*********************************************97 PP
2Myb_DNA-binding353.3e-1169111246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T+ Ed  +    +  G++ W+ Ia+ ++ gRt++++k++w++
  Zpz_sc00963.1.g00010.1.sm.mk  69 GEFTEHEDRVICSMYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                                   78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.884966IPR017930Myb domain
SuperFamilySSF466891.34E-2711109IPR009057Homeodomain-like
SMARTSM007179.4E-131364IPR001005SANT/Myb domain
PfamPF002499.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-241569IPR009057Homeodomain-like
CDDcd001675.07E-101662No hitNo description
PROSITE profilePS5129415.81867117IPR017930Myb domain
SMARTSM007175.8E-1167115IPR001005SANT/Myb domain
PfamPF002492.7E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTEHEDRVIC SMYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLGS  120
SSMTAPPHRA PRQHHRPLNL MLQNTSSSLS QLTYSGFFPE TAGSLHDSII PALTLPPPQD  180
FMLSSSLALP NASSLLHAHG GTQQQLLHQH VVKEESGSMI VFGSDQQSCS SSDVGARSRP  240
QFSHGKELSF DGYYGYSLNG SIGNHDHGSL LQLQEHHQQA QVPVEYSYDA IKQLLMSSNG  300
NNLHGAGQDH DDGGMEGFGA QGKVTIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00963.1.g00010.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686601e-107AK368660.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077K09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975125.11e-180transcription factor RAX2
TrEMBLA0A3L6PSV41e-180A0A3L6PSV4_PANMI; Transcription factor RAX2-like
STRINGSi010627m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-70myb domain protein 36