PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00962.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 22627.8 Da PI: 10.9214 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.5 | 6.9e-13 | 164 | 202 | 1 | 43 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 ++y GVr+++ +g+W+Ae+rdp+ + r++lg+f tae A+ Zpz_sc00962.1.g00010.1.am.mk 164 CQYYGVRRRP-WGKWAAEVRDPV----KgVRVWLGTFPTAESAR 202 5788******.**********75....44**********99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-16 | 164 | 201 | No hit | No description |
Pfam | PF00847 | 1.3E-7 | 165 | 202 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-8 | 165 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-12 | 165 | 203 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.845 | 165 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-17 | 165 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 166 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 188 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVSTPRPSRS SHHPTRRNNS VIATKQITQD VAVPSHGRPI KASKPCLPAC KLPKGIEAFV 60 ASRLPEGCAP ALPSHPRPTI RLIRSIKMCG GAILAELIPT EPARRVTRGH PWAAGKTSDD 120 DFEAAFRAFD DFENSDGEDN EGPVGFGGAS AAGSKRSSSR RRPCQYYGVR RRPWGKWAAE 180 VRDPVKGVRV WLGTFPTAES ARVLNQVL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00962.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797880.1 | 5e-36 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A2T7CGR1 | 1e-34 | A0A2T7CGR1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I649 | 1e-34 | A0A2T8I649_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia04158.1.p | 2e-36 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.3 | 3e-18 | ERF family protein |