PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00961.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 407aa    MW: 44094.4 Da    PI: 6.6455
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00961.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.5e-11108149147
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                                     s+y+GV++++++grW+++I+d      + k+++lg   +  +A + ai
  Zpz_sc00961.1.g00020.1.sm.mkhc 108 SQYRGVTFYRRTGRWESHIWD------CgKQIYLGELAFLVDAFADAI 149
                                     78*******************......55*******999888876665 PP
2AP244.34.5e-14219269155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ +++g
  Zpz_sc00961.1.g00020.1.sm.mkhc 219 SKYRGVTLHK-GGRWEAR---M---GqllGTKYIYLGLFDTEIEAARAYDRAAIRFNG 269
                                     89********.9******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.804109184IPR001471AP2/ERF domain
CDDcd000181.34E-19109184No hitNo description
SMARTSM003803.1E-23109190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12109184IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-8152185IPR016177DNA-binding domain
CDDcd000181.23E-22219279No hitNo description
PfamPF008471.7E-9219269IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-16219278IPR016177DNA-binding domain
PROSITE profilePS5103216.423220277IPR001471AP2/ERF domain
SMARTSM003801.4E-28220283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-15220277IPR001471AP2/ERF domain
PRINTSPR003678.0E-6221232IPR001471AP2/ERF domain
PRINTSPR003678.0E-6259279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVLDLNAESP GDGGEAASPA SSSADAGGGF FRFDLLGGSP DGEGFSSPPV VTRQLFPSPH  60
PGVVVLDGSP PPSTEMVTGP WTRGVAAVPA PVPSPGKKSR RGPRSRSSQY RGVTFYRRTG  120
RWESHIWDCG KQIYLGELAF LVDAFADAIF ALLLGGFDTA HEAARAYDRA AIKFRGLDAD  180
INFDLKDYED DLKQMRNWTK EEFVHILRRQ STGFARGSSK YRGVTLHKGG RWEARMGQLL  240
GTKYIYLGLF DTEIEAARAY DRAAIRFNGK DSVTNFDPST YDGDVPPEIE KDVADRDILD  300
LSLRISQPNL HDPRGSGILS GLRSAGESPE ASTVVFPKEA TNRMEEKRPE LVGAPPFSPW  360
AWQMQGSPAP PLPAPAASSG FSTTTGAGMQ YTGPRLFAVG HRFPPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00961.1.g00020.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804503.11e-147floral homeotic protein APETALA 2-like isoform X2
SwissprotQ8H4431e-140AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A1E5V8N51e-149A0A1E5V8N5_9POAL; Floral homeotic protein APETALA 2
TrEMBLA0A3L6QPQ61e-148A0A3L6QPQ6_PANMI; AP2-EREBP transcription factor
STRINGSi029636m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-81AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]