PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00955.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 135aa MW: 15301.3 Da PI: 10.3666 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.4 | 4e-25 | 9 | 84 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++w+fF++r++++ +g r+ r+t sgyWkatg+ v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Zpz_sc00955.1.g00010.1.sm.mk 9 DPEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSWVFSSsANRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 84 4569************************************9867788***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.57 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-28 | 7 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-13 | 10 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MAGAANVSDP EQWFFFCPRA ERELHGGRPA RTTPSGYWKA TGSPSWVFSS SANRVIGEKR 60 TMVFYQGRAP TGTKTRWKMN EYKAVADPAV AVAVVPPRDI QLRNEFSVCR VYISTGTLRS 120 FDRRPLNHDD IHHHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-17 | 11 | 85 | 71 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-17 | 11 | 85 | 71 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-17 | 11 | 85 | 71 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-17 | 11 | 85 | 71 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
3swm_B | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
3swm_C | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
3swm_D | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
3swp_A | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
3swp_B | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
3swp_C | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
3swp_D | 3e-17 | 11 | 85 | 74 | 146 | NAC domain-containing protein 19 |
4dul_A | 3e-17 | 11 | 85 | 71 | 143 | NAC domain-containing protein 19 |
4dul_B | 3e-17 | 11 | 85 | 71 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00955.1.g00010.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC112209 | 1e-68 | AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence. | |||
GenBank | AK106277 | 1e-68 | AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence. | |||
GenBank | AK109939 | 1e-68 | AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence. | |||
GenBank | AP014967 | 1e-68 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-68 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978711.1 | 5e-70 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-47 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | K3ZJF4 | 1e-68 | K3ZJF4_SETIT; Uncharacterized protein | ||||
STRING | Si026707m | 2e-69 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 7e-46 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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