PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00942.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 412aa    MW: 42585.6 Da    PI: 8.3112
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00942.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.29.6e-293384959
                   ZF-HD_dimer  9 ClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                                  C++NhAaslGghavDGCgEfmp +g++ +++++l+CaACgCHRnFHRr+ve 
  Zpz_sc00942.1.g00010.1.am.mk 33 CRRNHAASLGGHAVDGCGEFMPLPGADaADPSSLNCAACGCHRNFHRRTVEG 84
                                  ***************************99*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152323.063081IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.9E-243382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-173380IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.1E-263381IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.12E-16200267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27201268IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-22209265IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDAMDVKQYK AVVFPNGGVA KKVKPAAVAP AVCRRNHAAS LGGHAVDGCG EFMPLPGADA  60
ADPSSLNCAA CGCHRNFHRR TVEGSAPPPS APAPPALPAP PQRREEATED RLPAVVDGAD  120
SDSDSDASEY DEERSVSPPP STQLHHVPVP VAQQPPPPPP SYPSAAPHML LSLSSGAPGT  180
AMAAAARLPA HQLTSPSSAL TPGGGAAPRK RFRTRFTAEQ KQRMQELSER LGWRLQKRDE  240
AIVDEWCRDI GVGKGVFKVW MHNNKHNFLG GHSARRSASA SAGAPTAAAA AALHNHTPTA  300
AGSAPPFHPS APSPPPPPVL TSSSPGATGF ININGAASSA PASYQEKING SSSPQSARVA  360
DAVEPSTGGT VRDGMGYEEE GAAFCRAGGA PNEIWAPLTL KRPARSAMAW PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-202092671775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00942.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145929.21e-113uncharacterized protein LOC100279452
SwissprotQ6ER212e-79ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A0A9JHD41e-116A0A0A9JHD4_ARUDO; Uncharacterized protein
STRINGGRMZM2G161315_P011e-112(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-23homeobox protein 34