PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00928.1.g00210.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 299aa    MW: 31090.4 Da    PI: 8.5462
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00928.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA29.97.6e-10127146120
                          GATA   1 CsnCgttkTplWRrgpdgnk 20 
                                   C+nCgt++TplWR+gp+g+k
  Zpz_sc00928.1.g00210.1.am.mk 127 CANCGTSSTPLWRNGPRGPK 146
                                   ******************98 PP
2GATA63.72.1e-20172206135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Zpz_sc00928.1.g00210.1.am.mk 172 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 206
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.517121151IPR000679Zinc finger, GATA-type
SMARTSM004010.0031121157IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-5123151No hitNo description
Gene3DG3DSA:3.30.50.101.2E-7125146IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-7127146IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-19166218IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.246166202IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13168206No hitNo description
Gene3DG3DSA:3.30.50.101.7E-17170206IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.06E-13171203No hitNo description
PfamPF003204.2E-18172206IPR000679Zinc finger, GATA-type
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLDRYHNQSS SMVASTTFSL FFPPLPKVGQ WPDEDDHSSI TTSPSSPSSS STGSVDCTLS  60
LGTPSSRRAS AAAEPMTKHV ALPPPAHPSY VAWDDVVGGH QSSDYCRKPA GGAAKAGAHD  120
AFADRRCANC GTSSTPLWRN GPRGPKSSDY CRKPAGGAAK AGAHDAFADR RCANCGTSST  180
PLWRNGPRGP KSLCNACGIR FKKEERRAAA TAAMETGAGA SAGCGYSAQR AQYEYAAAVA  240
RASPCEGSFP CGGGVDADAN ASANTNAPFL PWRLNVVAPA PAPAFAAVWP ERTSLFQYN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00928.1.g00210.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963570.13e-53GATA transcription factor 15
TrEMBLA0A3L6R8D01e-53A0A3L6R8D0_PANMI; GATA transcription factor 19-like
STRINGPavir.Ca00998.1.p2e-52(Panicum virgatum)
STRINGSi022366m7e-52(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-16GATA transcription factor 19