PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00928.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 710aa    MW: 76320.9 Da    PI: 10.179
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00928.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.92.9e-29519569358
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                   +vrY+eCl+NhAa+lGgh+vDGCgEfmp      + +alkCaACgCHR+FHR++  
  Zpz_sc00928.1.g00170.1.am.mk 519 AVRYNECLRNHAAALGGHVVDGCGEFMPG-----DDDALKCAACGCHRSFHRKDDG 569
                                   79**************************7.....568****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF481509.07E-35157321IPR011257DNA glycosylase
Gene3DG3DSA:1.10.340.308.1E-24159269IPR011257DNA glycosylase
CDDcd000564.11E-26160321No hitNo description
PfamPF007301.1E-17164309IPR003265HhH-GPD domain
SMARTSM004784.4E-9168323IPR003265HhH-GPD domain
Gene3DG3DSA:1.10.1670.101.2E-13271318IPR023170Helix-turn-helix, base-excision DNA repair, C-terminal
PfamPF047704.4E-24520567IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-24521567IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-16522567IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.626522567IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.6E-16640692IPR009057Homeodomain-like
SuperFamilySSF466891.97E-7641689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006284Biological Processbase-excision repair
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MTNLPTNRLE CRLTPRSSKI PQTPPIPDPP TTNQGRKSRP FTSSSMGEQS LSQPKPQPPS  60
PSAPASAGSA PSPSTTAAAA AAASTSRAKT ASSRPKKART STSPNPPKKP RLALSLPGRP  120
LSADGEVAAA IGHLHAADPA LAAVIDAHEP PAFHCPHRPF HSLVRSILYQ QLAFKAAASV  180
YSRFLALLGG EASVVPDAVL ALTPHQLRQI GVSPRKASYL HDLAHKYVTG ILSDAAIVNM  240
DDRSLSAMLT MVKGIGAWSV HMFMIFSLAR PDVLPTADLG VRKGVQLLYE LEDVPRPSQM  300
DNLCERWRPY RSVGAWYIVL LTCYFGGSAG MVLWWHPTSS RQGGPWEEDE ESKGRGSPSE  360
ENEETSLRLK MAGSHRNSIQ GPQKKVLASG STAMKPQPLA MLGPRGEPCQ CRSPPPRRRR  420
CTTLHRHEWS ASAAVSPAKA KPSRLSSLVV GLPPPHVVLA LTRSATRSPA PRHALMEFTT  480
TRGQEQEPIH AMGASSTPPL AHSAVPRAPP SSSSSSPSAV RYNECLRNHA AALGGHVVDG  540
CGEFMPGDDD ALKCAACGCH RSFHRKDDGQ QQSRHHLLLP APAPAPPVTP TAPRVPLLMP  600
PPPHASSYPP FAPFAYHGTP SASGGTTTES SSEERAPPSA QGQHQQQPAP RKRFRTKFTP  660
EQKELMLAFA ERLGWRMQKQ DEALVEQGST RILFPEIEAH AARDEMMRGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2yg8_A1e-2612831830211DNA-3-methyladenine glycosidase II, putative
2yg8_B1e-2612831830211DNA-3-methyladenine glycosidase II, putative
2yg9_A1e-2612831830211DNA-3-methyladenine glycosidase II, putative
2yg9_B1e-2612831830211DNA-3-methyladenine glycosidase II, putative
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00928.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.12e-18mini zinc finger