PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00928.1.g00160.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 149aa    MW: 16961.1 Da    PI: 6.5448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00928.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.1e-091457344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                   WT+   +l+ +a + + ++   +W+ Iar +g g+++++++ ++
  Zpz_sc00928.1.g00160.1.am.mk 14 QWTPKQNKLFEQALAVYDKDtpdRWTNIARAVG-GKSAEEVRRYY 57
                                  7********************************.*********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.5921065IPR017884SANT domain
SMARTSM007173.7E-81163IPR001005SANT/Myb domain
PfamPF002492.9E-71357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-61467IPR009057Homeodomain-like
SuperFamilySSF466893.98E-121469IPR009057Homeodomain-like
CDDcd001671.29E-71560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MASLSMTKPS ARAQWTPKQN KLFEQALAVY DKDTPDRWTN IARAVGGKSA EEVRRYYELL  60
EEDVKHIESG KVPFPEYRGN AGAATGYEAD RYEYLILYAP FEVEAFEDLT RRKEAVREDA  120
TLRARVYIMG TTCMHESQSS PARASALRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30482178RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00928.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849217e-70KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.11e-50protein RADIALIS-like 3
TrEMBLA0A3L6T7C12e-49A0A3L6T7C1_PANMI; Protein RADIALIS-like 3
STRINGSi023770m4e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-24RAD-like 1