PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00912.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 430aa    MW: 46093.9 Da    PI: 8.8655
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00912.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.43.7e-57182277297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+ep
  Zpz_sc00912.1.g00220.1.am.mk 182 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEP 262
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk+yl+k+relegek
  Zpz_sc00912.1.g00220.1.am.mk 263 LKLYLHKFRELEGEK 277
                                   ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-53179288IPR009072Histone-fold
SuperFamilySSF471131.07E-39184281IPR009072Histone-fold
PfamPF008082.2E-27187251IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.5E-20215233No hitNo description
PROSITE patternPS006850218234IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.5E-20234252No hitNo description
PRINTSPR006156.5E-20253271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAKGACVQWS QRESTSNSPS PTSRSYVVAS LDHPRGSRVP WPTQTADTPP AWQKRTASAS  60
AGWPQTYRQT NGPPLATSPA RCVLIPTIHP TEGRCQSLHS PLKPLSALVA LLPPPFQIFA  120
RPRRPSCSGE FQPSCLAPLI RRAARKERGE QGEPALFLGP AAMPDSDNES GGPSNAEFSS  180
PREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS EFISFITGEA SDKCQREKRK  240
TINGDDLLWA MTTLGFEDYI EPLKLYLHKF RELEGEKVAT GASGSGQQQK DAPSSAHNNA  300
AVYGVYGGAG AGGSGSGMVM MMGQPMYGSP PAGYPQPPHH QMVMGGAKGA YGHGDASPSG  360
LGRQDRPLRG NESEPAGFGW PGKDLHGQVT GHCSVRDACF CLDWRHRSEA VSISPMKERG  420
HGMHCAARGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-47182272797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00912.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563831e-173EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-70nuclear factor Y, subunit B3