PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00900.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 338aa    MW: 38001.3 Da    PI: 9.6744
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00900.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.6e-12440138
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                                  rg W + Ede+l+++v+++G+++W++Ia++++ gR++ 
  Zpz_sc00900.1.g00010.1.am.mk  4 RGHWRPSEDEKLKELVALYGPHNWNAIAEKLQ-GRSAQ 40
                                  899*****************************.**986 PP
2Myb_DNA-binding51.72e-1677120146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   r ++++eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Zpz_sc00900.1.g00010.1.am.mk  77 RSPFSEEEEELLLASHRVHGNR-WAVIARLFP-GRTDNAVKNHWHV 120
                                   789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.216153IPR017930Myb domain
SMARTSM007171.6E-7373IPR001005SANT/Myb domain
PfamPF002494.6E-11440IPR001005SANT/Myb domain
SuperFamilySSF466892.33E-224118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-23578IPR009057Homeodomain-like
CDDcd001676.70E-10769No hitNo description
PROSITE profilePS5129424.46472126IPR017930Myb domain
SMARTSM007174.5E-1576124IPR001005SANT/Myb domain
PfamPF002491.2E-1377119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2079125IPR009057Homeodomain-like
CDDcd001677.20E-692119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVA LYGPHNWNAI AEKLQGRSAQ AMESYHGVIN KELIEEFVSG  60
KSCRLRWFNQ LDPRINRSPF SEEEEELLLA SHRVHGNRWA VIARLFPGRT DNAVKNHWHV  120
IMARRCRERT RMANKRCGTA AGSAIENDSN PRSAKKDRPD VANSMASLLD KYRSEVTGPF  180
AIGHDSMEGY RSTTNEDMTT DKSVEFYDFL QVNANSSDTK WGSSIEEQDE NRADDDQAEG  240
GQVPFIDFLK RKASSEGTVP GQAACRWSGS REALNLIASN LRAHGSSPDT ARVPSTPPPG  300
HRRRRELSAT STGARSRDRS SRRRFPWRGI VAAPARAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-2711261105C-Myb DNA-Binding Domain
1msf_C3e-2711261105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00900.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281911e-98KJ728191.1 Zea mays clone pUT6465 MYB transcription factor (MYB77) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644560.11e-118transcription factor MYB52 isoform X2
TrEMBLK4AEE91e-115K4AEE9_SETIT; Uncharacterized protein
STRINGSi037256m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.15e-68myb domain protein 54