PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00888.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 245aa    MW: 26600.7 Da    PI: 4.5915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00888.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-193485156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g+
  Zpz_sc00888.1.g00090.1.sm.mk 34 TRYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTAEEAAIAYDRAARNIRGA 85
                                  5799******.**********754...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-273493No hitNo description
SuperFamilySSF541713.4E-213592IPR016177DNA-binding domain
SMARTSM003802.8E-323598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-283592IPR001471AP2/ERF domain
PfamPF008474.0E-113584IPR001471AP2/ERF domain
PROSITE profilePS5103221.3113592IPR001471AP2/ERF domain
PRINTSPR003671.2E-83647IPR001471AP2/ERF domain
PRINTSPR003671.2E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDFSYFFSSS SSSSSSSEKK SSKRRQQQDS GSATRYLGVR RRPWGRYAAE IRDPVTKERH  60
WLGTFDTAEE AAIAYDRAAR NIRGASARTN FAYPDLPPGS SVTPYLSPDI SADQLQQYYA  120
NPAPVAQQPT PAADQLAGHG SAGCEAYSSS YHVPEAMSSY GADDSMAYAA NAQMDMMYDG  180
GAGRAWCDAS ELEFGGYRDD NANANASHGM YFEEGYVHSP LFSPMPSADE VDGFQLGGSS  240
SSYNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1735911471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11825KKSSKRRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00888.1.g00090.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278676e-87KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821358.11e-108ethylene-responsive transcription factor LEP-like
TrEMBLA0A1E5VG731e-114A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP
STRINGPavir.Aa01903.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-29ERF family protein