PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00883.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 442aa MW: 48664.7 Da PI: 7.4444

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00883.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.3	8.6e-22	11	87	2	78
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 CaaC++ r kC++dCv+apyf e+ ++fa+++ +FGasnv+k+l++ +++er +a++ l+y A + P G + Zpz_sc00883.1.g00040.1.sm.mk 11 CAACRHIRWKCEPDCVFAPYFGPEDGEHFAVLEGVFGASNVSKVLADHDPHERVAAIKRLLYLAAENVLAPAGGRWS 87 *******************************************************************9999998655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.35	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-20	11	87	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MASSSEEAKV CAACRHIRWK CEPDCVFAPY FGPEDGEHFA VLEGVFGASN VSKVLADHDP 60 HERVAAIKRL LYLAAENVLA PAGGRWSSVP WGHGEKPPNQ QMAEAQQAAA TAQASREQAL 120 MMQCHSRTGF GVPAGHLPSC QATEIQQQQT AAAVVTNAWH QDMMMRQAAA AQNYQALGLQ 180 QQRQNQQLAE GVRHQNHHTA LTAEAAKRAT AADAARVREI DTHLQFLRQA AMEEQYMNRY 240 LRTMMQQTVA DGQQEHHQLR HDRAGQNDAM RRNAMLQRNI ARGLANRQNF DQHIKIQQQY 300 WEKELMMMQK AAANAPAMPG EQPQPQRQTG NAQFQKESSL LPREAGSGSG ARTIPLLPER 360 STNAEAFLVQ PRLQPQTVNS FGIIGSQVEP SLPPLPPSLA DVPRQQQNDG GNEEIQAESG 420 GAKMQPCAQV RNLVVFALGA NP

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MASSSEEAKV CAACRHIRWK CEPDCVFAPY FGPEDGEHFA VLEGVFGASN VSKVLADHDP  60
HERVAAIKRL LYLAAENVLA PAGGRWSSVP WGHGEKPPNQ QMAEAQQAAA TAQASREQAL  120
MMQCHSRTGF GVPAGHLPSC QATEIQQQQT AAAVVTNAWH QDMMMRQAAA AQNYQALGLQ  180
QQRQNQQLAE GVRHQNHHTA LTAEAAKRAT AADAARVREI DTHLQFLRQA AMEEQYMNRY  240
LRTMMQQTVA DGQQEHHQLR HDRAGQNDAM RRNAMLQRNI ARGLANRQNF DQHIKIQQQY  300
WEKELMMMQK AAANAPAMPG EQPQPQRQTG NAQFQKESSL LPREAGSGSG ARTIPLLPER  360
STNAEAFLVQ PRLQPQTVNS FGIIGSQVEP SLPPLPPSLA DVPRQQQNDG GNEEIQAESG  420
GAKMQPCAQV RNLVVFALGA NP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	11	89	12	90	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	11	89	12	90	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00883.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36363	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	8e-19	LBD family protein