PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00879.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 405aa    MW: 42547.3 Da    PI: 4.6553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00879.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-173377247
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                   +WT+eEd+ll  av+++G ++W+ I+  ++ gR+ k+c++rw + 
  Zpz_sc00879.1.g00090.1.sm.mk 33 ASWTPEEDDLLRVAVARHGARNWTVISGAVP-GRSSKSCRLRWINQ 77
                                  58*****************************.***********985 PP
2Myb_DNA-binding55.41.4e-1784128147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +g++T+eEd  l+ a+ ++G++ W+tIa+ ++ gRt++ +k++w++ 
  Zpz_sc00879.1.g00090.1.sm.mk  84 KGAFTPEEDAVLAAAHGKYGNR-WSTIAKLLP-GRTDNTIKNHWNST 128
                                   799*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.882778IPR017930Myb domain
SuperFamilySSF466892.01E-2930125IPR009057Homeodomain-like
SMARTSM007175.7E-143180IPR001005SANT/Myb domain
PfamPF002492.6E-163377IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-223483IPR009057Homeodomain-like
CDDcd001677.17E-143476No hitNo description
PROSITE profilePS5129425.29279133IPR017930Myb domain
SMARTSM007172.8E-1583131IPR001005SANT/Myb domain
PfamPF002494.6E-1584128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2484132IPR009057Homeodomain-like
CDDcd001671.35E-1186129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVVPGAVDDG STPRPSSSES TTTSSGAATR VRASWTPEED DLLRVAVARH GARNWTVISG  60
AVPGRSSKSC RLRWINQLSP DVEKGAFTPE EDAVLAAAHG KYGNRWSTIA KLLPGRTDNT  120
IKNHWNSTLK RQRRAAAALA GAKECDLMPP PVDDDQVVVA ATLVDVEKDV TSSTVARIPF  180
QPLVDPTEEN EGGEREEEGD DEDENGGSGE DEDSVLRLLQ LPPMKRSSVV SNGGNSHLPL  240
PLLPLLEKPS EETKSPPPPP QAPQDSESVV TSLTLNLPGS DSVVPAPAAS PTPPRVTSAT  300
ATATEEEPPA KARAKILEKD PRLVSVMRGM IVDEVRRHMG PVLPPPGAAT FSIMPTPEGR  360
PAPGTSSAAG GTNGPPAAAD VDQHEAKRAA LPGEPTATGT DADER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-33311323104C-Myb DNA-Binding Domain
1msf_C7e-33311323104C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00879.1.g00090.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4373233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-44myb domain protein 70