PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00861.1.g00250.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 469aa MW: 51127 Da PI: 6.206 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.7 | 6.8e-109 | 87 | 453 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 +lLl+cAeav+ ++l++a+ lL ++ elasp g++ +R+aayf AL ar+++s + y+ l++ +++ +++ a++ Zpz_sc00861.1.g00250.1.am.mk 87 LTLLLRCAEAVAVDQLTEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLAAAQSR-----SVAGAFQ 162 579***************************************************999999988888887.....6778999 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 +++ +sP++kf+h+taNqaIl+a++ge+r+H++D+di+qGlQWp L++ LasRp+ p slRiTg+g+ s + le+tg+ Zpz_sc00861.1.g00250.1.am.mk 163 AYNALSPLVKFAHFTANQAILQALDGEDRLHVVDLDIMQGLQWPGLFHILASRPRRPRSLRITGLGA----SLDVLEATGR 239 *******************************************************************....9********* PP GRAS 164 rLakfAeelgvpfefnvl......vakrledleleeL..rvkp.....gEalaVnlvlqlhrlldesvsleserdevLklv 231 rLa+fA++lg+pfef+++ va++ + l +++ + + +Ea++V++++ h l+d ++s +++l+ Zpz_sc00861.1.g00250.1.am.mk 240 RLADFAASLGLPFEFRPVegkighVADAAALLGPRDHhhH--HqrqqrDEATVVHWMH--HCLYDVTGSDMG----TVRLL 312 *****************96655544445555544443441..234456*********9..888888888888....***** PP GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhet 311 ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l + +e+ er+ vEr+llg ei+n+va g +r+ + + Zpz_sc00861.1.g00250.1.am.mk 313 KSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALgDGATEEEAAERHAVERQLLGAEIRNIVAVGGPKRTGEVR- 391 *****************.899*******************766667777*************************998887. PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +e+W++ l++aGF+pv+l + a+qa++ll +++ +gy++ ee+ +l lgWkd +L+++SaW Zpz_sc00861.1.g00250.1.am.mk 392 VERWSDELRRAGFRPVSLAGSPATQARMLLGMYPLKGYTLVEEDWCLRLGWKDLSLLTASAW 453 9************************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.692 | 60 | 434 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-106 | 87 | 453 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MIRVTGNTRN EELLALIDRR PADAMLQGVL SRAPTTTTAT DAAATKAKRP ASAEEEEEEG 60 QERRKRLQAL VVGAEGEGAE TKGLRLLTLL LRCAEAVAVD QLTEARDLLP EIAELASPFG 120 SSPERVAAYF GDALCARVLS SYLGAYSPLA AAQSRSVAGA FQAYNALSPL VKFAHFTANQ 180 AILQALDGED RLHVVDLDIM QGLQWPGLFH ILASRPRRPR SLRITGLGAS LDVLEATGRR 240 LADFAASLGL PFEFRPVEGK IGHVADAAAL LGPRDHHHHH QRQQRDEATV VHWMHHCLYD 300 VTGSDMGTVR LLKSLRPKLI TIVEQDLGHS GDFLGRFVEA LHYYSALFDA LGDGATEEEA 360 AERHAVERQL LGAEIRNIVA VGGPKRTGEV RVERWSDELR RAGFRPVSLA GSPATQARML 420 LGMYPLKGYT LVEEDWCLRL GWKDLSLLTA SAWAPADDDD VAAAARHDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-150 | 92 | 455 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-150 | 92 | 455 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-150 | 92 | 455 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00861.1.g00250.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956238 | 0.0 | EU956238.1 Zea mays clone 1559464 nodulation signaling pathway 2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958062.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-162 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A3L6QTZ5 | 0.0 | A0A3L6QTZ5_PANMI; Scarecrow-like protein 23 | ||||
STRING | MLOC_62589.1 | 0.0 | (Hordeum vulgare) | ||||
STRING | Si032551m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-138 | GRAS family protein |
Publications ? help Back to Top | |||
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