PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00852.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 361aa    MW: 38537.4 Da    PI: 11.0375
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00852.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS62.21e-1926335187172
                          GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetge 163
                                    sP+++++  +aN aI+eav  ++++H +Dfd+s + Q +aL q La+R+ +  sl++T++++p+s     ++ +l ++ge
  Zpz_sc00852.1.g00060.1.am.mk 263 GSPCFRLALHAANVAIVEAVGDHRAIHLVDFDVSAP-QHAALVQYLADRRVPGTSLKVTAIADPSSPfaqsQTATLPAVGE 342
                                   59*******************************987.99************************998889999999****** PP

                          GRAS 164 rLakfAeel 172
                                   rL+k+A+++
  Zpz_sc00852.1.g00060.1.am.mk 343 RLKKLADRV 351
                                   ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.6E-17263351IPR005202Transcription factor GRAS
PROSITE profilePS5098510.758264361IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSCTSQVHVR VVREWHRIAV GSTCKLGGQN QAHGPSRGAA TGAQPPSGER GPDSRTKPTG  60
HLEEQPPELG HLAAPLPELR IERRPTSRRR NRIHGPSHGA IAGARPPSEQ TTRAAERSSR  120
WLRRRLAVAE HKCNCPWPRT RARGRGGASP XXXHASDDGG SPWPSTDATG TARRGQARGR  180
QGHLATCPLP PSSLAVAQPP RLSPVHSCRE STPLAPHPDS CTPVFQPPTA SPPWSHLRGH  240
AWRWPARGEQ RWPGGADCSG VDGSPCFRLA LHAANVAIVE AVGDHRAIHL VDFDVSAPQH  300
AALVQYLADR RVPGTSLKVT AIADPSSPFA QSQTATLPAV GERLKKLADR VDNAGLDDGG  360
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00852.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7184422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-10SCARECROW-like 1