PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00850.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 466aa    MW: 51765.5 Da    PI: 7.8722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00850.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-14150197148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT++Ed++lv  +   G  +W+++++  g+ R++k+c++rw +yl
  Zpz_sc00850.1.g00120.1.am.mk 150 KGPWTADEDQKLVSFILGNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 197
                                   79******************************99************97 PP
2Myb_DNA-binding45.32e-14207271547
                                   -HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                                   ++ E+++ vd+++qlG++                        W++Ia++++ gRt++++k++w+++
  Zpz_sc00850.1.g00120.1.am.mk 207 SEAEEKIVVDLHAQLGNRchahatprfilltelfsvrcstrEWSKIASRLP-GRTDNEIKNHWNTH 271
                                   899************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-19141199IPR009057Homeodomain-like
PROSITE profilePS5129419.633145201IPR017930Myb domain
SMARTSM007172.6E-10149199IPR001005SANT/Myb domain
PfamPF002491.5E-12150197IPR001005SANT/Myb domain
SuperFamilySSF466893.39E-21150201IPR009057Homeodomain-like
CDDcd001676.08E-8152197No hitNo description
Gene3DG3DSA:1.10.10.603.1E-20200276IPR009057Homeodomain-like
SMARTSM007172.1E-10202274IPR001005SANT/Myb domain
PROSITE profilePS5129412.144202276IPR017930Myb domain
PfamPF002494.4E-11206271IPR001005SANT/Myb domain
CDDcd001672.18E-8207272No hitNo description
SuperFamilySSF466893.39E-21244273IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSTTAIASQA HRVGGDWACR EHQRKKAPFL GRRVPLLPYV SMLDDAGCFL HGKIAGGVLV  60
GWEKHGLWAT SQSLEPCVFA DLVIDDLHVV SCLTRPVPCS SPPLLPYKGR QFLITCVSEQ  120
RGVFSVLDQK LTSQVKMGRQ PCCDKVGLKK GPWTADEDQK LVSFILGNGH CCWRAVPKLA  180
GLLRCGKSCR LRWTNYLRPD LKRGLLSEAE EKIVVDLHAQ LGNRCHAHAT PRFILLTELF  240
SVRCSTREWS KIASRLPGRT DNEIKNHWNT HIKKKLRKMG IDPVTHKPLL QPTQLQQLSP  300
AEARPPTPER QRQPKPNTVP AEAATRSSSQ HDKEEHPPLL SKSPGFCTDE VPMMHPDEIT  360
MLSPCNDDLP TEPASISTPT TSHSAASASS SCDKEATLFP AMDEWPDTLS LVGLDDMMIA  420
APPSPWDEYP VQPLSPVFVD PCFGAYPYQR TGAAFEQEAW NKLELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-231482765108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00850.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0926061e-100FP092606.1 Phyllostachys edulis cDNA clone: bphylf044c24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572214.11e-108transcription factor MYB20
TrEMBLI1I7771e-107I1I777_BRADI; Uncharacterized protein
STRINGBRADI3G36370.11e-108(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-81myb domain protein 43