PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00843.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 313aa MW: 33881.3 Da PI: 10.1878

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00843.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.1	1.8e-27	20	69	3	52
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 rlrWt+eLH+ Fv+av+ LGG++kAtPk il++m+v gLt++hvkSHLQ+ Zpz_sc00843.1.g00040.1.sm.mk 20 RLRWTTELHHGFVRAVDCLGGPDKATPKLILQIMDVRGLTIAHVKSHLQR 69 9************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.537	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-25	15	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-19	20	69	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.84E-13	20	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGGGRNGAAT RRYNRSKVLR LRWTTELHHG FVRAVDCLGG PDKATPKLIL QIMDVRGLTI 60 AHVKSHLQRC NHGKQQYIRS THSPLMREEA PKSSCAYPRK GAEAAAATHE SMLQRNSDMG 120 APGTQRCSDD CMQAVSMGRS RRWTDQGIGW QRHAAASSTL QALGFWVRGY APFKISRPIV 180 NHISPVARQV SSKYISLEDR RFMFSIRDEP AERRSPSQSL DPEAVDAITS WHSVSSVVGV 240 PSPLPSSTNF SGCSGPSGGC FAGQKGKSTA AEAKAIAEAA SSATCIMPRC RTGCNLSSEN 300 SGTPSCPRPV ELN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00843.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799208.1	5e-84	uncharacterized protein LOC112879085
TrEMBL	K3YZB7	1e-80	K3YZB7_SETIT; Uncharacterized protein
STRING	Pavir.Ab02674.1.p	2e-82	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-24	G2-like family protein