PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00820.1.g00230.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 640aa MW: 69199 Da PI: 9.816 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 252 | 299 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+ Ede+l+ +++++G g+W++ ++ g+ R++k+c++rw +yl Zpz_sc00820.1.g00230.1.am.mk 252 RGRWTAKEDEILASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 299 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 40.2 | 8.1e-13 | 305 | 411 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT........................................................... CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........................................................... 22 rg+ ++eE+++++++++ lG+ Zpz_sc00820.1.g00230.1.am.mk 305 RGNISKEEEDIIIKLHATLGNSlkeaqghdsrdprsrlrfgggelssvptpksssrhsvkrtcvgcyvhrwsvpvrvpagl 385 7899****************99*********************************************************** PP .-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 .tWktIartmgkgRtlkqcksrwqkyl 48 tW++Ia++++ gRt++++k++w+++l Zpz_sc00820.1.g00230.1.am.mk 386 mTWSLIASHLP-GRTDNEIKNYWNSHL 411 ***********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 243 | 302 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.372 | 247 | 303 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-12 | 251 | 301 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 252 | 299 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.94E-20 | 253 | 326 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.85E-10 | 254 | 299 | No hit | No description |
PROSITE profile | PS50090 | 7.503 | 300 | 411 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 303 | 323 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-11 | 304 | 413 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 384 | 415 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.01E-7 | 387 | 416 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-7 | 387 | 411 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-6 | 388 | 411 | No hit | No description |
Pfam | PF06640 | 3.4E-65 | 429 | 639 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MCSSWHRVNA GDESCDTLRH CHTGIQSISV RAHALTRECA KPVSVSTKTP DNSTGRTRSP 60 GGRPGAHAVV HQRPAPHGFH KRGTVARTNA SERRRAERTN KVVFRRSDGA DGGEEGDIAR 120 RTGRPSYLGA KRAADNVVAR EAAEGNGGES RRHGALFPAG GQVSAAPATR PRTRAPACYR 180 DRRKRNPTRR WLTGAGERNE SAITRMAGPR PRARAACYIT APARTDSRVP VGRPRTRAMG 240 RAPCCEKVGL KRGRWTAKED EILASYIAKH GEGSWRSLPK NAGLLRCGKS CRLRWINYLR 300 ADVKRGNISK EEEDIIIKLH ATLGNSLKEA QGHDSRDPRS RLRFGGGELS SVPTPKSSSR 360 HSVKRTCVGC YVHRWSVPVR VPAGLMTWSL IASHLPGRTD NEIKNYWNSH LSRQIHTYRR 420 IFTAGNDTTI TIDISKLHCA GKRRGGRTPG RSALKSTTSS DDKTGSKKVD AEPEPAETTT 480 KAKEASAFSP AAATSAASSP PQSDDGARSV VVDQDQNQPN SVSDNTPDGP CSEDASGPMT 540 SLLEEPLDLG LWEAETEMDM EALLLSNTGI DGAAGYSSSF TTGLEAAAGD DLLDMDWDGF 600 AAHLWGDPAQ NNQAAAEPQA AAGCNPEELE SFATWLLSDF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00820.1.g00230.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039485 | 1e-84 | BT039485.1 Zea mays full-length cDNA clone ZM_BFc0015O24 mRNA, complete cds. | |||
GenBank | EU959466 | 1e-84 | EU959466.1 Zea mays clone 218238 myb-related protein Myb4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797897.1 | 1e-125 | myb-related protein P-like | ||||
Swissprot | P27898 | 1e-81 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A0E0KCP6 | 1e-124 | A0A0E0KCP6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G13890.1 | 1e-125 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-56 | myb domain protein 111 |