PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00820.1.g00230.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 640aa    MW: 69199 Da    PI: 9.816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00820.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-16252299148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rgrWT+ Ede+l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00820.1.g00230.1.am.mk 252 RGRWTAKEDEILASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 299
                                   89******************************99************97 PP

2Myb_DNA-binding40.28.1e-13305411148
                                   TSSS-HHHHHHHHHHHHHTTTT........................................................... CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........................................................... 22 
                                   rg+ ++eE+++++++++ lG+                                                            
  Zpz_sc00820.1.g00230.1.am.mk 305 RGNISKEEEDIIIKLHATLGNSlkeaqghdsrdprsrlrfgggelssvptpksssrhsvkrtcvgcyvhrwsvpvrvpagl 385
                                   7899****************99*********************************************************** PP

                                   .-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  23 .tWktIartmgkgRtlkqcksrwqkyl 48 
                                    tW++Ia++++ gRt++++k++w+++l
  Zpz_sc00820.1.g00230.1.am.mk 386 mTWSLIASHLP-GRTDNEIKNYWNSHL 411
                                   ***********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21243302IPR009057Homeodomain-like
PROSITE profilePS5129421.372247303IPR017930Myb domain
SMARTSM007174.7E-12251301IPR001005SANT/Myb domain
PfamPF002495.8E-15252299IPR001005SANT/Myb domain
SuperFamilySSF466894.94E-20253326IPR009057Homeodomain-like
CDDcd001675.85E-10254299No hitNo description
PROSITE profilePS500907.503300411IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-20303323IPR009057Homeodomain-like
SMARTSM007172.0E-11304413IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-20384415IPR009057Homeodomain-like
SuperFamilySSF466895.01E-7387416IPR009057Homeodomain-like
PfamPF002493.3E-7387411IPR001005SANT/Myb domain
CDDcd001671.86E-6388411No hitNo description
PfamPF066403.4E-65429639IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MCSSWHRVNA GDESCDTLRH CHTGIQSISV RAHALTRECA KPVSVSTKTP DNSTGRTRSP  60
GGRPGAHAVV HQRPAPHGFH KRGTVARTNA SERRRAERTN KVVFRRSDGA DGGEEGDIAR  120
RTGRPSYLGA KRAADNVVAR EAAEGNGGES RRHGALFPAG GQVSAAPATR PRTRAPACYR  180
DRRKRNPTRR WLTGAGERNE SAITRMAGPR PRARAACYIT APARTDSRVP VGRPRTRAMG  240
RAPCCEKVGL KRGRWTAKED EILASYIAKH GEGSWRSLPK NAGLLRCGKS CRLRWINYLR  300
ADVKRGNISK EEEDIIIKLH ATLGNSLKEA QGHDSRDPRS RLRFGGGELS SVPTPKSSSR  360
HSVKRTCVGC YVHRWSVPVR VPAGLMTWSL IASHLPGRTD NEIKNYWNSH LSRQIHTYRR  420
IFTAGNDTTI TIDISKLHCA GKRRGGRTPG RSALKSTTSS DDKTGSKKVD AEPEPAETTT  480
KAKEASAFSP AAATSAASSP PQSDDGARSV VVDQDQNQPN SVSDNTPDGP CSEDASGPMT  540
SLLEEPLDLG LWEAETEMDM EALLLSNTGI DGAAGYSSSF TTGLEAAAGD DLLDMDWDGF  600
AAHLWGDPAQ NNQAAAEPQA AAGCNPEELE SFATWLLSDF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00820.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0394851e-84BT039485.1 Zea mays full-length cDNA clone ZM_BFc0015O24 mRNA, complete cds.
GenBankEU9594661e-84EU959466.1 Zea mays clone 218238 myb-related protein Myb4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797897.11e-125myb-related protein P-like
SwissprotP278981e-81MYBP_MAIZE; Myb-related protein P
TrEMBLA0A0E0KCP61e-124A0A0E0KCP6_ORYPU; Uncharacterized protein
STRINGOPUNC03G13890.11e-125(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-56myb domain protein 111
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]