PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00809.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 869aa    MW: 94618.3 Da    PI: 11.7061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00809.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12387422137
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                                   +g+WT+eEde+lv ++k++G g+W+t ++  g +R+l
  Zpz_sc00809.1.g00140.1.am.mk 387 KGPWTAEEDEKLVAYIKKHGQGNWRTLPKNAG-KRSL 422
                                   79******************************.9997 PP
2Myb_DNA-binding26.91.1e-084254492247
                                   T-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqky 47 
                                   ++W++Ia++++ gRt++++k++w+++
  Zpz_sc00809.1.g00140.1.am.mk 425 DRWSAIAARLP-GRTDNEIKNYWNTH 449
                                   57*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22378458IPR009057Homeodomain-like
PROSITE profilePS5129419.932382454IPR017930Myb domain
SuperFamilySSF466894.49E-15384446IPR009057Homeodomain-like
SMARTSM007173.6E-19386452IPR001005SANT/Myb domain
PfamPF002491.9E-9387421IPR001005SANT/Myb domain
CDDcd001674.67E-14389450No hitNo description
PfamPF002496.2E-7425449IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MTTSPDQEQE IFLREPPGYG EISAGPRGHV RPVVRVRLAV FVTTLASRLA NVGNAKARVG  60
CTRTHCALGL LQVCSASALS AHVALQLTWI PDAGGPGHAS PQKQSYGGSA HGYLALAPFC  120
YTGRDTNAGT IRSTIQPSVS SARRNANIGR RHTCALTITL VARTSGARRS PRTATAAFPR  180
SRNFISLDAD EIRRRPVSVG QQAGIDARRN ETRAAPVARG QNATARWPAA SLQGTKAEGP  240
PPAGRPNAAK LSAVAARGMH AFERTRRTAC VTNQRATWGR QALRAISRAS EPILRLPFGS  300
AGLCSAPCSS SADASAPDAQ TAGHRQGQLP GHFWRLGMLC DHVPSFPWRR EATSRARDTN  360
AGTESYQGSS SIQMGRAPCC EKTGLKKGPW TAEEDEKLVA YIKKHGQGNW RTLPKNAGKR  420
SLSSDRWSAI AARLPGRTDN EIKNYWNTHI RKRLLRMGID PVTHAPRLDL LDLSSLLKPA  480
AAAYYSTQAD LDTLRALEPL ANYPELLRLA SALLAGTPAV ADHQQQQLLP WLLHQAQMTQ  540
QAATAAAMAA QQVTAPTTTT QADQFMQQTA RERLHVTEPV ESPWNHQITY RKGRARKISS  600
TQETKIFVAE VASHDWVARP LSLLLCVTAF RPGAGEPHAP RDGDKTEASS AALIDPCFSW  660
VRASAKSSGQ NPAATTAALV MYTVAHQSAT SSHRRRPARR GGDAWAATSA RGRGRRCRSR  720
PRRLTLRQRR SSPYPPSQLP WSTTNMVNLI STVDASVQMQ RTLPKLSAVF VFYLVNAGYL  780
PAGRHERTSH GSSPPGGWRA NIAVPWFPWA GVLPPLRKTA SRRSSQPRYT GVAARVVHSR  840
IARRIMEYVT RRDRGPTGRR PVDTRERDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00809.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-105CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7248722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-48MYB-like 102