PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00802.1.g00200.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 492aa MW: 53081.5 Da PI: 9.2867 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.3 | 1.6e-49 | 142 | 267 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgy Zpz_sc00802.1.g00200.1.am.mk 142 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGY 221 79***************************.99***************7767789*************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Zpz_sc00802.1.g00200.1.am.mk 222 WKATGADRMIRGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 267 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-57 | 141 | 291 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.408 | 141 | 291 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-24 | 143 | 267 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 492 aa Download sequence Send to blast |
MHVLTCQRAR RSSSEREAAE ASTDRRQEFG RGSRPKLDSS WLVSFASLNP TTPPSPSTRQ 60 GSSRHKQLRS CDSCAQNHST TCTAALDFSS ILRVRASYAM SRDLEDGHGG AVAAGGGAGS 120 SEASVGGGAG DGGDSHDNDL VMPGFRFHPT EEELIEFYLR RKVEGRRFNV DLIADLDLYR 180 FDPWELPAMA VMGGKEWFFY VPRDRKYRNG DRPNRVTASG YWKATGADRM IRGENNRPIG 240 LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AADADPLTHK SEISLCRVYK RSGIDDGHGQ 300 PSSSTQASSG RRTRTSRHMS TSPASTPLSH IQHPGSFHLL QGECSSVSPP TIMDPLLAAH 360 NVPQLLQPPR PRALTGNSLA AGASVPTEGA AILASTYSLL NMAAVPMGSS RPVDELSTLV 420 GHSQAYANHL SAATGSHFVL PLPLPQPTPQ VAPLGALPMA APPLASVADK LSWDWNPVPD 480 TTARDYSNSS FK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-55 | 143 | 292 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-55 | 143 | 292 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-55 | 143 | 292 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-55 | 143 | 292 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-55 | 143 | 292 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-55 | 143 | 292 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-55 | 143 | 292 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00802.1.g00200.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT060478 | 0.0 | BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds. | |||
GenBank | HQ858762 | 0.0 | HQ858762.1 Zea mays clone UT1609 NAC transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962060.1 | 1e-171 | NAC domain-containing protein 35 | ||||
TrEMBL | K3Z6L9 | 1e-170 | K3Z6L9_SETIT; Uncharacterized protein | ||||
STRING | Si022103m | 1e-170 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.1 | 3e-89 | NAC domain containing protein 35 |