PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00801.1.g00080.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 650aa MW: 70901.3 Da PI: 9.8555 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.5 | 5e-34 | 352 | 432 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssas 71 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + s Zpz_sc00801.1.g00080.1.am.mk 352 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLSEPthrgsgsgdaamS----- 427 689*********************************************************9995555443322111..... PP TCP 72 eceaesssssas 83 + +++ Zpz_sc00801.1.g00080.1.am.mk 428 -S------PMSA 432 .1......1111 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 34.922 | 353 | 411 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.8E-33 | 353 | 433 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 650 aa Download sequence Send to blast |
MRRRSLMASS CSPHGRPADA NTAMDELSLG VIRWQAHEIL ASPAAPSRTS SANMTDGRLA 60 RARVWSLNVV ARSSPSHLEI ECLDSGATEK PTMAACRNGK GESKKQPKDR HPPAAPAVKM 120 IQRMVRAMSR FEGRQGTTAL APSCAAMPSI DRDEQCVCVL ARTWPLLLVS LQLICRTGGG 180 GGLAGRGCSP CPTCTRQWRW TRHSLDPKIC SSTCERSCER GSGRGQEIAA AAAQELARSR 240 SPLSLGSLQM LPYPNPHHFG ISQEQPHPNP ATAGFPMGPP VVHPDQQHYD HHFFPGHAHY 300 FNSETLEAVL RPPRAASERE VVGVMPVPQG ASRNSVAGAG GQGNARARKR PFRTDRHSKI 360 RTAQGVRDRR MRLSLDVARD FFALQDRLGF DKASKTVDWL LTQSKPAIDR LSEPTHRGSG 420 SGDAAMSSPM SAEIVKETAA AGSGKGSVEK TASRNSSFMD HSCELDRLVS AAPVLGEYYY 480 EFGEMMGSNE GEGDDDGEYD EDGHLSARER APLPFEKERE KPGLPLLRPR TAEGICVESA 540 TRRRPAYITA ADGRREQPYL ASGRAGYSAA TCVGSAPYFR VPGRRARSCM LACSARGRRS 600 QTADRFVSEM NLPVDRFYPP LARALSIYFR RVAARIVRSA VDHTKLLKLI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00801.1.g00080.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM578620 | 6e-83 | KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578621 | 6e-83 | KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578622 | 6e-83 | KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18550.1 | 8e-25 | TCP family protein |