PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00796.1.g00280.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 262aa    MW: 28390.3 Da    PI: 6.7895
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00796.1.g00280.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.4e-161150342
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                  i n+s r  tf kRr+ ++KK +EL +LCd++++v++++ 
  Zpz_sc00796.1.g00280.1.sm.mk 11 ITNDSARRATFNKRRASLMKKTSELATLCDVDACVVVYGA 50
                                  89************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.185161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-22186IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-19160IPR002100Transcription factor, MADS-box
CDDcd002667.82E-28286No hitNo description
PRINTSPR004041.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-171149IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MARKKVNLQL ITNDSARRAT FNKRRASLMK KTSELATLCD VDACVVVYGA GSSQPEVWPP  60
SATEAMRILG RFKAMPEVDQ CKRMMDMEDY LRQRNAKLKE QLEKASRENH KRETALLLHN  120
AIAGRGPGVA GLSRDELFNL ESTVNTRLKE VMNAIQRLKE QGHGDPATAL QLSMASQSQE  180
PPAVPYIADS DPSEAVPAPD LEDWLLGLTK DEGFSGESGS FGGGAAGAST SGGLGDMLKL  240
DNTMATLPKA DQKPSFAFPP PM
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00796.1.g00280.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647071.14e-75agamous-like MADS-box protein AGL80
TrEMBLA0A1E5ULN71e-75A0A1E5ULN7_9POAL; Agamous-like MADS-box protein AGL80
STRINGGRMZM5G839969_P012e-74(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-30M-type_MADS family protein