PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00780.1.g00100.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 301aa    MW: 31084.4 Da    PI: 4.9329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00780.1.g00100.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-3081139259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                      D+++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp+ v++tY+ eHnh+
  Zpz_sc00780.1.g00100.1.sm.mkhc  81 TDEWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRADPDKVVVTYSFEHNHS 139
                                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.77975141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-2977139IPR003657WRKY domain
SuperFamilySSF1182905.49E-2578139IPR003657WRKY domain
SMARTSM007742.1E-3580140IPR003657WRKY domain
PfamPF031061.1E-2582138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDREWSDGAA VSSPTASSGE GKVGAGSDGV SADSPMSTTP VVPATPAGGR RRSANKRVVT  60
VPLADVSGPR PKGVGEGNTS TDEWAWRKYG QKPIKGSPFP RAYYRCSSSK GCPARKQVER  120
SRADPDKVVV TYSFEHNHSA AVSRAQNRQA PKHMAQGPVP PEPPAEDQSV SAGTHDVVAA  180
CATEGCGAGA AVEVHDEFRW LYDGVSVTSS IPPSDADEML YYGPMFFGAA AVASAPAPFP  240
DELGDVGALF GGGAAEEDAM FAGLGELPEC AMVFRRRAED GLTTAGGVKV EPAAEGAAIT  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-1753138376Disease resistance protein RRS1
5w3x_D5e-1753138376Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00780.1.g00100.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097709e-93AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAY8706039e-93AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814691.11e-110probable WRKY transcription factor 65
TrEMBLA0A2T7DH681e-115A0A2T7DH68_9POAL; Uncharacterized protein
STRINGOPUNC01G29620.11e-113(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.23e-43WRKY DNA-binding protein 69