PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00761.1.g00240.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 40697.2 Da PI: 6.9389 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.3e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++lv++++ +G +W++++++ g+ R++k+c++rw +yl Zpz_sc00761.1.g00240.1.sm.mk 13 RGLWSPEEDKKLVRYITAHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3e-17 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ ++da++ lG++ W+ Ia++++ gRt++++k++w++ Zpz_sc00761.1.g00240.1.sm.mk 66 RGTFSQEEERTIIDAHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.184 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.557 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.93E-12 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DKKLVRYITA HGHSCWSSVP KHAGLQRCGK SCRLRWINYL 60 RPDLKRGTFS QEEERTIIDA HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPKTHNLLPA SRSLLQGGKG ANPSNPAQFH LPNGAIANGC GAVEATTRPF TISSATKPAF 180 DALTVAPPME MAPAMYDVPN PGMLMRQDQA AIATIPGYLY PDNGHGVLMS FSDQNAGLQG 240 SMDFMNGTSS SSSMDYAVGM QNGNGFSQGM PAAAFMDETA ETWATAAIEP DMGAGMEVVQ 300 QPPPLPPSQR LVQGEVVSRP AVMHGGGAVA EKGLDMMDVS SVYSGVGANA AFDLELMESY 360 GLFCGGGNDM DHLQWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00761.1.g00240.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004006 | 6e-48 | AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06. | |||
GenBank | AP004259 | 6e-48 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 6e-48 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 6e-48 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802845.1 | 0.0 | transcription factor MYB83-like | ||||
TrEMBL | A0A2T7EWB6 | 0.0 | A0A2T7EWB6_9POAL; Uncharacterized protein | ||||
STRING | Sb02g033830.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 6e-83 | myb domain protein 67 |