PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00760.1.g00090.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 166aa    MW: 18880.3 Da    PI: 5.0652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00760.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63.1e-50201501129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhP+dee++++yL +kv +++++   +i e++i+++ePw+Lp+++k +ekew+f+s +d+ky++g+r nrat++g
  Zpz_sc00760.1.g00090.1.sm.mk  20 LPPGFRFHPHDEEIITFYLIPKVLNSNFTS-VAIGEANINNSEPWELPTTAKMGEKEWFFYSLKDHKYQNGERINRATNAG 99 
                                   79*************************988.67***************989999*************************** PP

                           NAM  82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   +Wkatgkdke++++     + +g+kktLvfy+grapkgekt W+mhey+le
  Zpz_sc00760.1.g00090.1.sm.mk 100 FWKATGKDKEIYQAsvmFPTIIGMKKTLVFYTGRAPKGEKTGWIMHEYQLE 150
                                   *************64443445***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5217150IPR003441NAC domain
PROSITE profilePS5100549.1620166IPR003441NAC domain
PfamPF023651.5E-2521149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDQQEQEGIR GGVDDGCLNL PPGFRFHPHD EEIITFYLIP KVLNSNFTSV AIGEANINNS  60
EPWELPTTAK MGEKEWFFYS LKDHKYQNGE RINRATNAGF WKATGKDKEI YQASVMFPTI  120
IGMKKTLVFY TGRAPKGEKT GWIMHEYQLE GIPEDLKEQE GACATN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-421814918145NAC domain-containing protein 19
3swm_B1e-421814918145NAC domain-containing protein 19
3swm_C1e-421814918145NAC domain-containing protein 19
3swm_D1e-421814918145NAC domain-containing protein 19
3swp_A1e-421814918145NAC domain-containing protein 19
3swp_B1e-421814918145NAC domain-containing protein 19
3swp_C1e-421814918145NAC domain-containing protein 19
3swp_D1e-421814918145NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00760.1.g00090.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024983086.14e-66NAC domain-containing protein 92-like
SwissprotQ9FLJ22e-61NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A118JZL69e-65A0A118JZL6_CYNCS; No apical meristem (NAM) protein
TrEMBLA0A1E5V4C43e-65A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRINGPavir.Ba02955.1.p3e-64(Panicum virgatum)
STRINGPavir.Eb00839.1.p3e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.17e-64NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]