PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00735.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 366aa    MW: 39435.3 Da    PI: 9.9242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00735.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-16205251151
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                   + +kGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a++
  Zpz_sc00735.1.g00030.1.am.mk 205 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAAL 251
                                   579****887.9******9996..33.5********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-11205251IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16206253IPR016177DNA-binding domain
PROSITE profilePS5103217.873206266IPR001471AP2/ERF domain
SMARTSM003803.8E-18206267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-23206257IPR001471AP2/ERF domain
PRINTSPR003671.9E-7207218IPR001471AP2/ERF domain
CDDcd000189.01E-20207251No hitNo description
PRINTSPR003671.9E-7229245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAPKFRGLRV EKKSNSVAQG RGFDYQLLAA ADLDTLTGKP LESGTGAGDT ARRRPVTRIP  60
RDPTPASAPP LLSHLRAAPP RRRCPTVATV AEENPCAEGP AHASALRASP SSSSAPRAPA  120
VSDPAKTREP EPLAPVLRPH KSRYLAGASR AAPRWNRARG HIAMDVGAFS SDYSSGTPSP  180
SYMTVSSAPP KRRAGRTKFK ETRHPVFKGV RRRNPGRWVC EVREPHGKQR IWLGTFETAE  240
MAARAHDVAA LXXXXARTTV PPVGAGHDEI RRAAAEAAEQ FRPALDQGNV AVEETITTMP  300
DLFSSESTQS ADHHPYCMVD DRFDFGMQGY LDMAQGMLID PPPMGGSSSG NGGDDNDGGE  360
VRLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00735.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6273536e-85AB627353.1 Zoysia japonica gene for CBF, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-96dehydration-responsive element-binding protein 1G
SwissprotQ6EP772e-81DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLK3YVG62e-95K3YVG6_SETIT; Uncharacterized protein
STRINGSi018262m4e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-25C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]