PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00730.1.g00220.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 524aa    MW: 55695.9 Da    PI: 7.8261
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00730.1.g00220.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.4e-11109141138
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38 
                                     s+y+GV++++++grW+++I+d      + k+++lgkf +
  Zpz_sc00730.1.g00220.1.sm.mkhc 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGKFHS 141
                                     78*******************......55********86 PP
2AP246.11.2e-14272322155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Zpz_sc00730.1.g00220.1.sm.mkhc 272 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 322
                                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.7E-5110243IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-18272330IPR016177DNA-binding domain
CDDcd000181.08E-25272330No hitNo description
PfamPF008471.2E-10272322IPR001471AP2/ERF domain
SMARTSM003801.9E-33273336IPR001471AP2/ERF domain
PROSITE profilePS5103216.489273330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17273330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MWDLNDSPAA EATTTLSPSA DDSGASSSSA AAVIDILEDA DDADAVVTRQ FFPTPPPAAA  60
AAGSTSAART GWLRLAAAPA PPTAGNVAPA VAAAAASKKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGKFH SCSIFSMLKL GPSAPFAIAA ISLLTMDMAC AGGFDTAHAA  180
ARYASLTSIC ISSDLPSKFS ANSSNPSNYH LCLVNLPRAY DRAAIKFRGV EADINFSLED  240
YQDDMKQMGN LSKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL  300
GLFDTEEEAA RAYDRAAIKC NGKDAVTNFD PIMYAEELEQ SSAATGGDEH NLNLSLGSSA  360
GSKRGSLDGG GDGDEESSDH RVLMAFDLDW QTAAARSTKA KQFEQSSKQA QMPPALQASQ  420
HLSFNPRHHH QFLSGGDPGT SDGLSLMIGG AGGGGGHCPP PLQQPQRLPR GWGNTTTWPP  480
YPPSPSTGAA ATATAAAASS RFPPYVTTQQ APSWTGFHSL TRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00730.1.g00220.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626960.0BT062696.1 Zea mays full-length cDNA clone ZM_BFb0334I17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824499.11e-139AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ91e-129APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0DJ681e-165A0A0E0DJ68_9ORYZ; Uncharacterized protein
STRINGPavir.J06508.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-60AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]