PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00719.1.g00130.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family S1Fa-like
Protein Properties Length: 364aa    MW: 41146 Da    PI: 9.1325
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00719.1.g00130.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA37.26e-12307361266
                            S1FA   2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGva 66 
                                     +va++++ kGlnPG+i llvv+++ll+f+v +             + k P+sk klkreklkqG+ 
  Zpz_sc00719.1.g00130.1.sm.mkhc 307 NVAIEDViKGLNPGMIALLVVASFLLLFFVED----------SSSKEKEPISK-KLKREKLKQGIR 361
                                     55666667*********************976..........46799*****7.7*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.9E-7314360IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSSSAPVAWE RSGPGPSGYE VDSRGCTLPA AWQVACAPLG SSSNFGGGAS RYGCNGDCEN  60
YVTVAWHHVL WLKNGLLNLL RRKWVTPSHL ARWPAATWAV GQQRIYSKRA MWAKPYFIEV  120
FCAEQTSTQR SESANHMLKN EVPPGSPMHV FVRQYMKLLS QRIEDKDFEE RRSKVEKQTP  180
TTNTPIERHA MQIYSPKMMV VIQQQLYDAG YYRIECLQEE RNYVAIHMYS EHRAAWARVQ  240
FTVSIEGSDC NTKRYEEFVK LAAEAKMKLR AKEGTPDGLS LQEMAARSVE SDGNSCFTAP  300
ESASHNNVAI EDVIKGLNPG MIALLVVASF LLLFFVEDSS SKEKEPISKK LKREKLKQGI  360
RPRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00719.1.g00130.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-09FAR1-related sequence 5