PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00695.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 827aa    MW: 89501.8 Da    PI: 7.3963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00695.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-0588110123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Zpz_sc00695.1.g00020.1.am.mk  88 FVCEICHKGFQRDQNLQLHRRGH 110
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-487110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.67E-687110No hitNo description
SMARTSM003550.04688110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63788110IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355170137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4160192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.67E-6167192No hitNo description
SuperFamilySSF534746.51E-39508782IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18203.7E-60512783IPR029058Alpha/Beta hydrolase fold
PfamPF126975.1E-18515775IPR000073Alpha/beta hydrolase fold-1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MSAAEEELLQ QHQQRRYRVI KPFLGSPPAP GMGNDDDGDL QRVTAGTSEP PPAGPPAAKK  60
KRSLPGTPDP TAEVIALSPK TLMATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLRQRG  120
GGGGGADGGC PPRKRVYVCP EPSCVHHNPA RALGDLTGIK KHYCRKHGEK KWKCERCAKR  180
YAVQSDWKAH AKVCGTREYK CDCGTVFSRL MNKLRARTAD RFDDSCTLVP KGKGHVPVSQ  240
RPHLGRDSFV THRAFCDALA QENNKLAQPM NMATVASALQ GQAALPPSTL QADDDVLDAA  300
EDDFDGMMDT KSPQLRMLPI SDDPPLIPPP LGMAGCMLSS LAARSVTAPA FSFSGNSRIN  360
NMMGLDMPHS DPGVGFSSAS MSATALLQKA AELGATTSVY SSAPGFPGSG FGPMFGGGPD  420
RVPPMSPFGP PLPAQTQLVG FDVGELLPGQ QYRGGSMTRA IGSLMHGGLQ QGVDHRRQDD  480
DDDDKRLVDD QSFSGVGPFG SSPMDSGKKK HHHFVLVHGV CHGAWCWYKV ATILESAGHR  540
VTALDMAGCG VSAVRVEEVR SFDEYSRPLL DAVAAAPPGE KVVLVGHSFG GHSLALAMQR  600
HPENVAVALF VSAAVPFVGR PMSLFLEQVQ MGSPHPSIHQ FLHEVRAFSD VLSMGTFGIA  660
ERDSEDPVET FLLGPEWMSQ RMYQLSPPED LKLATMLVRP SQLFLKDGTM TGERVLTEDG  720
YGAVSRVLVV TEEDKTWPAE DQRRVAASCG PGVEVRAIEG SDHMPMFSKP AVLAQLIMEV  780
ADKKFHAQLE TGNITREYAT LSWWMYLRYM HGVSSVTSSG NGLSSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2wfl_A2e-605067825263POLYNEURIDINE-ALDEHYDE ESTERASE
2wfl_B2e-605067825263POLYNEURIDINE-ALDEHYDE ESTERASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00695.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.11e-175protein indeterminate-domain 2-like
TrEMBLA0A0E0JTD10.0A0A0E0JTD1_ORYPU; Uncharacterized protein
STRINGOPUNC01G42220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.18e-91C2H2 family protein