PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00691.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 512aa    MW: 55729.2 Da    PI: 9.2338
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00691.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-093974322055
                                   HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Zpz_sc00691.1.g00060.1.am.mk 397 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 432
                                   4679*****************************885 PP
2Homeobox21.25e-074404702555
                                   --HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  25 psaeereeLAkklgLterqVkvWFqNrRake 55 
                                   p ++e+  LA+++gL+++q+ +WF N+R ++
  Zpz_sc00691.1.g00060.1.am.mk 440 PFETEKIALAESTGLDQKQINNWFINQRKRH 470
                                   66789999********************885 PP
3ELK37.26.3e-13352373122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLl+KYsgyL+sL+qEFs
  Zpz_sc00691.1.g00060.1.am.mk 352 ELKYQLLKKYSGYLSSLRQEFS 373
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.1E-22167211IPR005540KNOX1
PfamPF037901.4E-21168209IPR005540KNOX1
SMARTSM012565.4E-28214266IPR005541KNOX2
PfamPF037911.3E-21220264IPR005541KNOX2
PROSITE profilePS5121311.627352372IPR005539ELK domain
PfamPF037896.6E-10352373IPR005539ELK domain
SMARTSM011881.2E-7352373IPR005539ELK domain
PROSITE profilePS5007112.892372435IPR001356Homeobox domain
SuperFamilySSF466891.63E-18373440IPR009057Homeodomain-like
SMARTSM003894.4E-13374439IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-27377436IPR009057Homeodomain-like
CDDcd000862.13E-12384436No hitNo description
PfamPF059201.6E-16392431IPR008422Homeobox KN domain
PROSITE patternPS000270410433IPR017970Homeobox, conserved site
CDDcd000865.07E-8417474No hitNo description
SMARTSM003890.64440477IPR001356Homeobox domain
PfamPF059207.4E-10440469IPR008422Homeobox KN domain
PROSITE profilePS500719.944440473IPR001356Homeobox domain
SuperFamilySSF466896.42E-10440485IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-14440474IPR009057Homeodomain-like
PROSITE patternPS000270448471IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MADIFCPLGI HKGHRLNGSP PATGAHTFPF LSFHTPRPSL LINISPPPSL SPRPLPAALL  60
STAAPPLLVP RGKRGAAVSS RHGGASSSFG NLGAGRSSSG GGGSNSKPAA SSSFLQLPLS  120
SAAAAPAGVA YYGAPLALLH QGQAAGPSSS SQSQYGRHAE ISPAEADAIK AKIVAHPQYS  180
ALLAAYLDCQ KVGAPPDVLE KLTAVAGKLD ARPPNRHEPR DPELDQFMQE AYCNMLVKYR  240
EELTRPIDEA MEFLKRVEAQ LDSISGGAAA AGSSRLSLAG KTLLQLRPSL ASPSSLVVYG  300
RTALGLPHWE TVVLDSGSDG KSEGVGSSED DMDTTGRENE TSEIDPRAED KELKYQLLKK  360
YSGYLSSLRQ EFSKKKKKGK LPKEARQKLL HWWELHYKWP YPSETEKIAL AESTGLDQKQ  420
INNWFINQRK RHWKPSEDMP FETEKIALAE STGLDQKQIN NWFINQRKRH WKPSEDMPFV  480
MMEGFHPQTA AALYMDGPFL ADGMYRLGSR ME
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00691.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940391e-132FP094039.1 Phyllostachys edulis cDNA clone: bphyem209e11, full insert sequence.
GenBankFP1014691e-132FP101469.1 Phyllostachys edulis cDNA clone: bphyst005d10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.11e-176homeobox protein rough sheath 1
SwissprotO650341e-150KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-150KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A368PV501e-175A0A368PV50_SETIT; Uncharacterized protein
STRINGPavir.Bb00225.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-90KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]