PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00686.1.g00210.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 713aa MW: 76614.8 Da PI: 10.7004

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00686.1.g00210.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.9	1.9e-34	320	478	9	131
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasn 84 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ + sss+s+ Zpz_sc00686.1.g00210.1.am.mk 320 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapS---TSSSSSH 397 89*******************************************************99999444332221...2222221 PP TCP 85 sssg..........................kaaksaa.kskksqksaasalnlakesr.......akarararertrekmr 131 +++ +a +++a ++ +++aa+ +a+ ++ + a ra+e+tr+++ Zpz_sc00686.1.g00210.1.am.mk 398 YQQSvlgkrpreegdatvaaasafwaalpsAAPRTEAwGFSPLEAQAATYVPMAQAHHlnllaalSGAARRAEEETRQEHY 478 112244567777788888888888888887333333335555555555555555555566666666677777777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.7E-30	318	412	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	319	373	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MSNRSALCEP IPYRGAICGC SMTDWNDAVR TVKSQHLRTG SHADIPLLAN EVTETFADGG 60 TGSLQLYAES ELATQSSSSK TRKGWWPVHS PLPFQHRSSI FIRWRWLDRS RQNVDTRTWS 120 PAACGHPTVR AYVPVAPVTV RLAAPTLAST HGGSGTARRR PFRGATWRTP SPSMRSWAPA 180 NSAQPPAARP ITRCPLPGSF SIDFDSSSTQ NPCDLSVRCP ATARQRGLER QGISALALAC 240 LPCLALSTVA PQVHTSTSRQ RYETGAMPTR DVSTAAAAMF HVYQPAQIPS TAAPATAATD 300 GTVAVPTSTQ GKKKSAQGGK DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTIE 360 WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSSHYQQ SVLGKRPREE GDATVAAASA 420 FWAALPSAAP RTEAWGFSPL EAQAATYVPM AQAHHLNLLA ALSGAARRAE EETRQEHYYY 480 NRASVKGQQS VQSCWPMATQ AADEQITAMI TPGNPRTIPF RPRRSLFLAF PRNRFEGKGN 540 GGQKAAAPAA RTTAVLPPAA RLWKLCQCER RKGRGRCVCA RANPVRLRVT PGGNFVSASE 600 LLPVLVRCIY LSALSSRAAY RLRTDVRVSF TVYGAAVAAA ENGSYRLTRP AMVDGCHGAR 660 PWRSGFAVAC ALAAGKADPK GTWPSLEENE GGEARKRVKL PADAWTHADK CDA

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MSNRSALCEP IPYRGAICGC SMTDWNDAVR TVKSQHLRTG SHADIPLLAN EVTETFADGG  60
TGSLQLYAES ELATQSSSSK TRKGWWPVHS PLPFQHRSSI FIRWRWLDRS RQNVDTRTWS  120
PAACGHPTVR AYVPVAPVTV RLAAPTLAST HGGSGTARRR PFRGATWRTP SPSMRSWAPA  180
NSAQPPAARP ITRCPLPGSF SIDFDSSSTQ NPCDLSVRCP ATARQRGLER QGISALALAC  240
LPCLALSTVA PQVHTSTSRQ RYETGAMPTR DVSTAAAAMF HVYQPAQIPS TAAPATAATD  300
GTVAVPTSTQ GKKKSAQGGK DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTIE  360
WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSSHYQQ SVLGKRPREE GDATVAAASA  420
FWAALPSAAP RTEAWGFSPL EAQAATYVPM AQAHHLNLLA ALSGAARRAE EETRQEHYYY  480
NRASVKGQQS VQSCWPMATQ AADEQITAMI TPGNPRTIPF RPRRSLFLAF PRNRFEGKGN  540
GGQKAAAPAA RTTAVLPPAA RLWKLCQCER RKGRGRCVCA RANPVRLRVT PGGNFVSASE  600
LLPVLVRCIY LSALSSRAAY RLRTDVRVSF TVYGAAVAAA ENGSYRLTRP AMVDGCHGAR  660
PWRSGFAVAC ALAAGKADPK GTWPSLEENE GGEARKRVKL PADAWTHADK CDA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00686.1.g00210.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-30	TCP family protein