PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00663.1.g00230.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 14438.3 Da PI: 11.8358 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.2e-17 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+Wv+eIr+p + r r +lg++ t+e Aa a++ a l+g Zpz_sc00663.1.g00230.1.sm.mk 17 GYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVFFLRG 66 8*****777.**********943...5*********************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-23 | 17 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.599 | 17 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-16 | 17 | 69 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.9E-22 | 17 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-9 | 17 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MRRATGSGEA PAGERRGYRG VRRRRWGKWV SEIRVPGTRE RLWLGSYATP EAAAVAHDTA 60 VFFLRGGGAT GGGGDTFRSS RTQDAVAVFV NRQVRADRAC TEATVLAMSS SVPALGNTSH 120 FVIVASLPCI KLTST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00663.1.g00230.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954530 | 3e-53 | EU954530.1 Zea mays clone 1469452 transcriptional factor TINY mRNA, complete cds. | |||
GenBank | KJ727676 | 3e-53 | KJ727676.1 Zea mays clone pUT5603 AP2-EREBP transcription factor (EREB63) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SNE1 | 8e-22 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 6e-16 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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