PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00661.1.g00350.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 253aa    MW: 27985.4 Da    PI: 8.1732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00661.1.g00350.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.92.7e-4261391128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkr 73 
                                     +ppG+rF Pt+eel+++yL++k++g + ++e+vi+ +++y+v+Pw+L++        ++e + w+fF++r++ +a+g r
  Zpz_sc00661.1.g00350.1.sm.mkhc   6 VPPGYRFYPTEEELICFYLRNKLDGLRGDIERVIPVFEVYTVDPWQLKEiherlcGGAGEGEPWFFFCPRQEGEARGGR 84 
                                     69****************************99***************8545655422236779**************** PP

                             NAM  74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     ++r+t +gyWka g+  +v++++++++g++kt+vfy+grap+g+kt+W m+eyr+
  Zpz_sc00661.1.g00350.1.sm.mkhc  85 PSRVTPTGYWKAAGTPAAVYAADRRAIGVRKTMVFYRGRAPSGTKTTWKMNEYRA 139
                                     *****************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-463178IPR003441NAC domain
PROSITE profilePS5100545.6496180IPR003441NAC domain
PfamPF023654.9E-247138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAANGVPPGY RFYPTEEELI CFYLRNKLDG LRGDIERVIP VFEVYTVDPW QLKEIHERLC  60
GGAGEGEPWF FFCPRQEGEA RGGRPSRVTP TGYWKAAGTP AAVYAADRRA IGVRKTMVFY  120
RGRAPSGTKT TWKMNEYRAL QYDAGGTAEY GSSSSAHAAS PLSLPSQLRS EFSLCRLYTR  180
SGVLRQFDRR PLAGAASCPG EGPAEPSMAT AASLDDDDGS GGSKQQQMQL MERRDNNPYG  240
EDRIGIRYLF LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-29614117144NO APICAL MERISTEM PROTEIN
1ut4_B1e-29614117144NO APICAL MERISTEM PROTEIN
1ut7_A1e-29614117144NO APICAL MERISTEM PROTEIN
1ut7_B1e-29614117144NO APICAL MERISTEM PROTEIN
4dul_A1e-29614117144NAC domain-containing protein 19
4dul_B1e-29614117144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00661.1.g00350.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818071.11e-112NAC domain-containing protein 90-like
SwissprotQ9FMR32e-59NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1E5URX21e-120A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRINGSi002586m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-59NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]