PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00661.1.g00350.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 27985.4 Da PI: 8.1732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.9 | 2.7e-42 | 6 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkr 73 +ppG+rF Pt+eel+++yL++k++g + ++e+vi+ +++y+v+Pw+L++ ++e + w+fF++r++ +a+g r Zpz_sc00661.1.g00350.1.sm.mkhc 6 VPPGYRFYPTEEELICFYLRNKLDGLRGDIERVIPVFEVYTVDPWQLKEiherlcGGAGEGEPWFFFCPRQEGEARGGR 84 69****************************99***************8545655422236779**************** PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++r+t +gyWka g+ +v++++++++g++kt+vfy+grap+g+kt+W m+eyr+ Zpz_sc00661.1.g00350.1.sm.mkhc 85 PSRVTPTGYWKAAGTPAAVYAADRRAIGVRKTMVFYRGRAPSGTKTTWKMNEYRA 139 *****************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-46 | 3 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.649 | 6 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-24 | 7 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAANGVPPGY RFYPTEEELI CFYLRNKLDG LRGDIERVIP VFEVYTVDPW QLKEIHERLC 60 GGAGEGEPWF FFCPRQEGEA RGGRPSRVTP TGYWKAAGTP AAVYAADRRA IGVRKTMVFY 120 RGRAPSGTKT TWKMNEYRAL QYDAGGTAEY GSSSSAHAAS PLSLPSQLRS EFSLCRLYTR 180 SGVLRQFDRR PLAGAASCPG EGPAEPSMAT AASLDDDDGS GGSKQQQMQL MERRDNNPYG 240 EDRIGIRYLF LAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 6 | 141 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 6 | 141 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 6 | 141 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 6 | 141 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-29 | 6 | 141 | 17 | 144 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 6 | 141 | 17 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00661.1.g00350.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818071.1 | 1e-112 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 2e-59 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1E5URX2 | 1e-120 | A0A1E5URX2_9POAL; NAC domain-containing protein 90 | ||||
STRING | Si002586m | 1e-110 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 7e-59 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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