PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00658.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 319aa    MW: 35449.1 Da    PI: 8.4926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00658.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18170220255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g ++AeIrdp     k +r++lg+++ta eAa+a+++a+ +l+g
  Zpz_sc00658.1.g00160.1.am.mk 170 RYRGVRQRP-WGNYAAEIRDP---ArKGARVWLGTYDTAAEAARAYDRAAFRLRG 220
                                   7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.5170228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-31170229IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22170229IPR016177DNA-binding domain
SMARTSM003801.8E-34170234IPR001471AP2/ERF domain
CDDcd000182.86E-28170229No hitNo description
PfamPF008471.7E-13170220IPR001471AP2/ERF domain
PRINTSPR003674.1E-13171182IPR001471AP2/ERF domain
PRINTSPR003674.1E-13210230IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MHSSTCPAVV VALCRTTDSD QLDPFGHYVC SVTVCAHVMF KPYAVAHHDH ASTQVWSSRC  60
RSLLLHPSVK FQATSPTERV ITSMALQEHL DLIRAHLLED HDVATGATSS DASASPLTSP  120
RGRRLQAPAL SAPLPRRPAT VMMQQQWPAP LPQVQRQERQ CCCEEEDFRR YRGVRQRPWG  180
NYAAEIRDPA RKGARVWLGT YDTAAEAARA YDRAAFRLRG SKAILNFPNE VAFGTAAACW  240
VPSAAAAAPI NKGYAAGNKR KRSPEPSLQW ETDCLREGSD AVLQPHSEGW ARPEHEYTLA  300
AQRLASVAEP IRVCIQWWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-27171234669ATERF1
3gcc_A3e-27171234669ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00658.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947122e-75FP094712.1 Phyllostachys edulis cDNA clone: bphyem113i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402748.13e-59ethylene-responsive transcription factor 5
TrEMBLA0A317YE756e-59A0A317YE75_MAIZE; Ethylene-responsive transcription factor 5
STRINGPavir.Ib02259.1.p7e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-19ethylene responsive element binding factor 5